RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 PPP1R35Q8TAP8 253 aa10.65□□□□□ -0.7
CCDC42-202ENST00000539522 GCDHQ92947 438 aaPredicted RBP10.65□□□□□ -0.7
CCDC42-202ENST00000539522 C11orf54Q9H0W9 315 aaPredicted RBP10.65□□□□□ -0.7
CCDC42-202ENST00000539522 C7orf69Q9H7B7 122 aa10.65□□□□□ -0.7
CCDC42-202ENST00000539522 TMEM160Q9NX00 188 aa10.65□□□□□ -0.7
CCDC42-202ENST00000539522 ING3Q9NXR8 418 aa10.65□□□□□ -0.7
CCDC42-202ENST00000539522 KIF25Q9UIL4 384 aa10.65□□□□□ -0.7
CCDC42-202ENST00000539522 KCNS2Q9ULS6 477 aa10.65□□□□□ -0.7
CCDC42-202ENST00000539522 ODAMA1E959 279 aa10.64□□□□□ -0.71
CCDC42-202ENST00000539522 UBE2QL1A1L167 161 aa10.64□□□□□ -0.71
CCDC42-202ENST00000539522 C17orf98A8MV24 154 aa10.64□□□□□ -0.71
CCDC42-202ENST00000539522 MCRIP1C9JLW8 97 aa10.64□□□□□ -0.71
CCDC42-202ENST00000539522 SSX5O60225 188 aa10.64□□□□□ -0.71
CCDC42-202ENST00000539522 MT-ND4P03905 459 aa10.64□□□□□ -0.71
CCDC42-202ENST00000539522 IGHV4-38-2P0DP08 117 aa10.64□□□□□ -0.71
CCDC42-202ENST00000539522 RCVRNP35243 200 aa10.64□□□□□ -0.71
CCDC42-202ENST00000539522 FAUP35544 74 aaKnown RBP10.64□□□□□ -0.71
CCDC42-202ENST00000539522 KCNJ3P48549 501 aa10.64□□□□□ -0.71
CCDC42-202ENST00000539522 EDDM3BP56851 147 aa10.64□□□□□ -0.71
CCDC42-202ENST00000539522 TAS2R19P59542 299 aa10.64□□□□□ -0.71
CCDC42-202ENST00000539522 MRPS15P82914 257 aaKnown RBP10.64□□□□□ -0.71
CCDC42-202ENST00000539522 RBM39Q14498 530 aaKnown RBP10.64□□□□□ -0.71
CCDC42-202ENST00000539522 KRBOX4Q5JUW0 171 aa10.64□□□□□ -0.71
CCDC42-202ENST00000539522 FAM53AQ6NSI3 398 aaPredicted RBP10.64□□□□□ -0.71
CCDC42-202ENST00000539522 Q6ZNX1 250 aa10.64□□□□□ -0.71
CCDC42-202ENST00000539522 FAM185AQ8N0U4 392 aa10.64□□□□□ -0.71
CCDC42-202ENST00000539522 OR5D13Q8NGL4 314 aa10.64□□□□□ -0.71
CCDC42-202ENST00000539522 MRPL30Q8TCC3 161 aaKnown RBP10.64□□□□□ -0.71
CCDC42-202ENST00000539522 CORO2AQ92828 525 aa10.64□□□□□ -0.71
CCDC42-202ENST00000539522 UPRTQ96BW1 309 aa10.64□□□□□ -0.71
CCDC42-202ENST00000539522 HDHD3Q9BSH5 251 aaPredicted RBP10.64□□□□□ -0.71
CCDC42-202ENST00000539522 RIMS4Q9H426 269 aaPredicted RBP10.64□□□□□ -0.71
CCDC42-202ENST00000539522 IFT46Q9NQC8 304 aa10.64□□□□□ -0.71
CCDC42-202ENST00000539522 FAM240BA0A1B0GVZ2 78 aa10.63□□□□□ -0.71
CCDC42-202ENST00000539522 POM121CA8CG34 1229 aa10.63□□□□□ -0.71
CCDC42-202ENST00000539522 RNASEK-C17orf49H0YIS7 233 aa10.63□□□□□ -0.71
CCDC42-202ENST00000539522 J3QLI3 93 aa10.63□□□□□ -0.71
CCDC42-202ENST00000539522 NAPSAO96009 420 aa10.63□□□□□ -0.71
CCDC42-202ENST00000539522 LIPFP07098 398 aa10.63□□□□□ -0.71
CCDC42-202ENST00000539522 AKAIN1P0CW23 69 aa10.63□□□□□ -0.71
CCDC42-202ENST00000539522 NAT1P18440 290 aa10.63□□□□□ -0.71
CCDC42-202ENST00000539522 GATA3P23771 443 aa10.63□□□□□ -0.71
CCDC42-202ENST00000539522 RFX2P48378 723 aa10.63□□□□□ -0.71
CCDC42-202ENST00000539522 MEF2CQ06413 473 aaPredicted RBP10.63□□□□□ -0.71
CCDC42-202ENST00000539522 KLRD1Q13241 179 aa10.63□□□□□ -0.71
CCDC42-202ENST00000539522 SLC35E4Q6ICL7 350 aa10.63□□□□□ -0.71
CCDC42-202ENST00000539522 VMO1Q7Z5L0 202 aa10.63□□□□□ -0.71
CCDC42-202ENST00000539522 NRARPQ7Z6K4 114 aa10.63□□□□□ -0.71
CCDC42-202ENST00000539522 KIR3DL3Q8N743 410 aa10.63□□□□□ -0.71
CCDC42-202ENST00000539522 DUSP18Q8NEJ0 188 aa10.63□□□□□ -0.71
CCDC42-202ENST00000539522 NUDCD2Q8WVJ2 157 aa10.63□□□□□ -0.71
CCDC42-202ENST00000539522 AJUBAQ96IF1 538 aa10.63□□□□□ -0.71
CCDC42-202ENST00000539522 DMRTB1Q96MA1 342 aa10.63□□□□□ -0.71
CCDC42-202ENST00000539522 CMSS1Q9BQ75 279 aaKnown RBP10.63□□□□□ -0.71
CCDC42-202ENST00000539522 NCOR1P1Q9H4R4 102 aa10.63□□□□□ -0.71
CCDC42-202ENST00000539522 HRASLSQ9HDD0 168 aa10.63□□□□□ -0.71
CCDC42-202ENST00000539522 AK3Q9UIJ7 227 aa10.63□□□□□ -0.71
CCDC42-202ENST00000539522 AUP1Q9Y679 476 aa10.63□□□□□ -0.71
CCDC42-202ENST00000539522 LINC00312Q9Y6C7 94 aa10.63□□□□□ -0.71
CCDC42-202ENST00000539522 HIVEP2P31629 2446 aa10.63□□□□□ -0.71
CCDC42-202ENST00000539522 IGHV3OR16-10A0A075B7F0 116 aa10.62□□□□□ -0.71
CCDC42-202ENST00000539522 CENPVL3A0A0U1RRI6 287 aa10.62□□□□□ -0.71
CCDC42-202ENST00000539522 MEIS3P1A6NDR6 274 aa10.62□□□□□ -0.71
CCDC42-202ENST00000539522 ZNF736B4DX44 427 aaPredicted RBP10.62□□□□□ -0.71
CCDC42-202ENST00000539522 C15orf65H3BRN8 121 aa10.62□□□□□ -0.71
CCDC42-202ENST00000539522 HOXB4P17483 251 aaPredicted RBP10.62□□□□□ -0.71
CCDC42-202ENST00000539522 TBPP20226 339 aa10.62□□□□□ -0.71
CCDC42-202ENST00000539522 DTYMKP23919 212 aa10.62□□□□□ -0.71
CCDC42-202ENST00000539522 LDLRAD2Q5SZI1 272 aa10.62□□□□□ -0.71
CCDC42-202ENST00000539522 STEAP1BQ6NZ63 245 aa10.62□□□□□ -0.71
CCDC42-202ENST00000539522 ZNF880Q6PDB4 577 aa10.62□□□□□ -0.71
CCDC42-202ENST00000539522 CCBE1Q6UXH8 406 aaPredicted RBP10.62□□□□□ -0.71
CCDC42-202ENST00000539522 HOGA1Q86XE5 327 aa10.62□□□□□ -0.71
CCDC42-202ENST00000539522 PNKDQ8N490 385 aa10.62□□□□□ -0.71
CCDC42-202ENST00000539522 ENKURQ8TC29 256 aa10.62□□□□□ -0.71
CCDC42-202ENST00000539522 ST6GALNAC5Q9BVH7 336 aa10.62□□□□□ -0.71
CCDC42-202ENST00000539522 LINC00574Q9H8X3 128 aa10.62□□□□□ -0.71
CCDC42-202ENST00000539522 UNKLQ9H9P5 680 aaKnown RBP10.62□□□□□ -0.71
CCDC42-202ENST00000539522 SIRT7Q9NRC8 400 aa10.62□□□□□ -0.71
CCDC42-202ENST00000539522 ONECUT1Q9UBC0 465 aa10.62□□□□□ -0.71
CCDC42-202ENST00000539522 ANAPC10Q9UM13 185 aa10.62□□□□□ -0.71
CCDC42-202ENST00000539522 KPTNQ9Y664 436 aa10.62□□□□□ -0.71
CCDC42-202ENST00000539522 MEIKINA0A087WXM9 373 aa10.61□□□□□ -0.71
CCDC42-202ENST00000539522 NPIPB11E5RHQ5 1161 aa10.61□□□□□ -0.71
CCDC42-202ENST00000539522 M0R1W7 72 aa10.61□□□□□ -0.71
CCDC42-202ENST00000539522 TOX4O94842 621 aa10.61□□□□□ -0.71
CCDC42-202ENST00000539522 CD74P04233 296 aa10.61□□□□□ -0.71
CCDC42-202ENST00000539522 ZNF728P0DKX0 622 aa10.61□□□□□ -0.71
CCDC42-202ENST00000539522 RCC1P18754 421 aaPredicted RBP10.61□□□□□ -0.71
CCDC42-202ENST00000539522 OMGP23515 440 aa10.61□□□□□ -0.71
CCDC42-202ENST00000539522 SLC6A1P30531 599 aa10.61□□□□□ -0.71
CCDC42-202ENST00000539522 SSTR5P35346 364 aa10.61□□□□□ -0.71
CCDC42-202ENST00000539522 MEF2DQ14814 521 aa10.61□□□□□ -0.71
CCDC42-202ENST00000539522 SRSF7Q16629 238 aaKnown RBP eCLIP10.61□□□□□ -0.71
CCDC42-202ENST00000539522 RUSC1-AS1Q66K80 236 aa10.61□□□□□ -0.71
CCDC42-202ENST00000539522 BTNL3Q6UXE8 466 aa10.61□□□□□ -0.71
CCDC42-202ENST00000539522 C1orf122Q6ZSJ8 110 aa10.61□□□□□ -0.71
CCDC42-202ENST00000539522 BCL6BQ8N143 479 aaPredicted RBP10.61□□□□□ -0.71
CCDC42-202ENST00000539522 PIP4P2Q8N4L2 257 aa10.61□□□□□ -0.71
CCDC42-202ENST00000539522 OR4K15Q8NH41 348 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms