RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 PGA4P0DJD7 388 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 PGA5P0DJD9 388 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 PPIBP23284 216 aaKnown RBP4.69□□□□□ -1.66
CD44-236ENST00000533222 FCGR2BP31994 310 aaPredicted RBP4.69□□□□□ -1.66
CD44-236ENST00000533222 ADRA1AP35348 466 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 ZNF93P35789 620 aaPredicted RBP4.69□□□□□ -1.66
CD44-236ENST00000533222 OR1D4P47884 311 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 GZMMP51124 257 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 CNN1P51911 297 aaKnown RBP4.69□□□□□ -1.66
CD44-236ENST00000533222 PAX9P55771 341 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 ZNF92Q03936 586 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 MFGE8Q08431 387 aaPredicted RBP4.69□□□□□ -1.66
CD44-236ENST00000533222 FOXF1Q12946 379 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 PPP1R8Q12972 351 aaKnown RBP4.69□□□□□ -1.66
CD44-236ENST00000533222 PSG7Q13046 419 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 IL11RAQ14626 422 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 AADACL3Q5VUY0 350 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 LYPLAL1Q5VWZ2 237 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 C12orf73Q69YU5 71 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 STUMQ69YW2 141 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 DPPA3Q6W0C5 159 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 Q6ZN92 141 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 ZNF534Q76KX8 674 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 C16orf82Q7Z2V1 217 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 PIP4P1Q86T03 277 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 SLC35F2Q8IXU6 374 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 OR52R1Q8NGF1 315 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 OR52I1Q8NGK6 324 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 OR52I2Q8NH67 350 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 OR2AE1Q8NHA4 323 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 ATP6V0E2Q8NHE4 81 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 KIR2DL5BQ8NHK3 375 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 ZG16BQ96DA0 208 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 GMPPAQ96IJ6 420 aaPredicted RBP4.69□□□□□ -1.66
CD44-236ENST00000533222 ZNF582Q96NG8 517 aaPredicted RBP4.69□□□□□ -1.66
CD44-236ENST00000533222 OR6C1Q96RD1 312 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 P2RX4Q99571 388 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 NDFIP1Q9BT67 221 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 RBM24Q9BX46 236 aaKnown RBP4.69□□□□□ -1.66
CD44-236ENST00000533222 COA1Q9GZY4 146 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 BPIFA1Q9NP55 256 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 IL36GQ9NZH8 169 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 C1RLQ9NZP8 487 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 KIAA1456Q9P272 454 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 MTFP1Q9UDX5 166 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 ASF1AQ9Y294 204 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 TNRC6CQ9HCJ0 1690 aaKnown RBP4.69□□□□□ -1.66
CD44-236ENST00000533222 TRIP11Q15643 1979 aa4.69□□□□□ -1.66
CD44-236ENST00000533222 COL11A2P13942 1736 aaPredicted RBP4.69□□□□□ -1.66
CD44-236ENST00000533222 ZNF106Q9H2Y7 1883 aaKnown RBP4.69□□□□□ -1.66
CD44-236ENST00000533222 OR51F1A6NGY5 319 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 ZNF860A6NHJ4 632 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 FABP5P3A8MUU1 101 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 C9JQL5 133 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 C17orf112F2Z3M2 114 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 F8W1H4 67 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 H3BMH7 237 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 M0R1X1 148 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 PLPP3O14495 311 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 NKX2-8O15522 239 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 NPIPB7O75200 414 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 GCM2O75603 506 aaPredicted RBP4.68□□□□□ -1.66
CD44-236ENST00000533222 CER1O95813 267 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 EDN1P05305 212 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 CRYGDP07320 174 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 ZNF17P17021 662 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 CSRP1P21291 193 aaKnown RBP4.68□□□□□ -1.66
CD44-236ENST00000533222 SRIP30626 198 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 PRSS3P35030 304 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 SRP14P37108 136 aaKnown RBP4.68□□□□□ -1.66
CD44-236ENST00000533222 LPAR6P43657 344 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 PPICP45877 212 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 ASCL1P50553 236 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 WDR5P61964 334 aaKnown RBP4.68□□□□□ -1.66
CD44-236ENST00000533222 RPL8P62917 257 aaKnown RBP4.68□□□□□ -1.66
CD44-236ENST00000533222 HLA-DRB3P79483 266 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 HOXA4Q00056 320 aaPredicted RBP4.68□□□□□ -1.66
CD44-236ENST00000533222 KLRD1Q13241 179 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 MELKQ14680 651 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 ADIRFQ15847 76 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 BATFQ16520 125 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 TDRG1Q3Y452 100 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 SFXN4Q6P4A7 337 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 UNQ5815/PRO19632Q6UWF5 114 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 ERASQ7Z444 233 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 CDC20BQ86Y33 519 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 ZNF101Q8IZC7 436 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 ZIC4Q8N9L1 334 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 OR4F17Q8NGA8 305 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 OR2G3Q8NGZ4 309 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 C8orf46Q8TAG6 207 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 PTPMT1Q8WUK0 201 aaPredicted RBP4.68□□□□□ -1.66
CD44-236ENST00000533222 MBD3L1Q8WWY6 194 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 AQP3Q92482 292 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 NDRG1Q92597 394 aaKnown RBP4.68□□□□□ -1.66
CD44-236ENST00000533222 WBP2Q969T9 261 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 SMIM19Q96E16 107 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 RBMXL1Q96E39 390 aaKnown RBP4.68□□□□□ -1.66
CD44-236ENST00000533222 RITA1Q96K30 269 aa4.68□□□□□ -1.66
CD44-236ENST00000533222 UHRF2Q96PU4 802 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms