RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 GZMHP20718 246 aa17.65■□□□□ 0.42
VPS28-212ENST00000530836 IL13RA1P78552 427 aa17.65■□□□□ 0.42
VPS28-212ENST00000530836 DHRS2Q13268 280 aa17.65■□□□□ 0.42
VPS28-212ENST00000530836 DEFB113Q30KQ7 82 aa17.65■□□□□ 0.42
VPS28-212ENST00000530836 LYG2Q86SG7 212 aa17.65■□□□□ 0.42
VPS28-212ENST00000530836 SPICQ8N5J4 248 aa17.65■□□□□ 0.42
VPS28-212ENST00000530836 GALMQ96C23 342 aa17.65■□□□□ 0.42
VPS28-212ENST00000530836 ZNF486Q96H40 463 aaPredicted RBP17.65■□□□□ 0.42
VPS28-212ENST00000530836 GAFA1Q96PS6 74 aa17.65■□□□□ 0.42
VPS28-212ENST00000530836 RTBDNQ9BSG5 229 aaPredicted RBP17.65■□□□□ 0.42
VPS28-212ENST00000530836 RAB9BQ9NP90 201 aa17.65■□□□□ 0.42
VPS28-212ENST00000530836 ARFGEF3Q5TH69 2177 aa17.65■□□□□ 0.42
VPS28-212ENST00000530836 DSCAMO60469 2012 aa17.65■□□□□ 0.42
VPS28-212ENST00000530836 IGKV1-6A0A0C4DH72 117 aa17.65■□□□□ 0.42
VPS28-212ENST00000530836 FAM172BPA6NC97 362 aa17.65■□□□□ 0.42
VPS28-212ENST00000530836 TUSC2O75896 110 aa17.65■□□□□ 0.42
VPS28-212ENST00000530836 PAX1P15863 534 aa17.65■□□□□ 0.42
VPS28-212ENST00000530836 AKR1C4P17516 323 aa17.65■□□□□ 0.42
VPS28-212ENST00000530836 ZBTB25P24278 435 aa17.65■□□□□ 0.42
VPS28-212ENST00000530836 P2RX3P56373 397 aa17.65■□□□□ 0.42
VPS28-212ENST00000530836 FCN2Q15485 313 aa17.65■□□□□ 0.42
VPS28-212ENST00000530836 CR1LQ2VPA4 569 aa17.65■□□□□ 0.42
VPS28-212ENST00000530836 TGIF2LYQ8IUE0 185 aa17.65■□□□□ 0.42
VPS28-212ENST00000530836 MUC20Q8N307 709 aaPredicted RBP17.65■□□□□ 0.42
VPS28-212ENST00000530836 ZNF565Q8N9K5 539 aa17.65■□□□□ 0.42
VPS28-212ENST00000530836 ZNRF1Q8ND25 227 aa17.65■□□□□ 0.42
VPS28-212ENST00000530836 DEFB108BQ8NET1 73 aa17.65■□□□□ 0.42
VPS28-212ENST00000530836 KIRREL1Q96J84 757 aa17.65■□□□□ 0.42
VPS28-212ENST00000530836 ST6GAL2Q96JF0 529 aa17.65■□□□□ 0.42
VPS28-212ENST00000530836 TMPRSS13Q9BYE2 586 aa17.65■□□□□ 0.42
VPS28-212ENST00000530836 OR6C3Q9NZP0 311 aa17.65■□□□□ 0.42
VPS28-212ENST00000530836 ODAMA1E959 279 aa17.64■□□□□ 0.41
VPS28-212ENST00000530836 GYPAP02724 150 aa17.64■□□□□ 0.41
VPS28-212ENST00000530836 TFF1P04155 84 aa17.64■□□□□ 0.41
VPS28-212ENST00000530836 AADACP22760 399 aa17.64■□□□□ 0.41
VPS28-212ENST00000530836 NFYAP23511 347 aaPredicted RBP17.64■□□□□ 0.41
VPS28-212ENST00000530836 GLIPR1P48060 266 aa17.64■□□□□ 0.41
VPS28-212ENST00000530836 ADAD2Q8NCV1 583 aaKnown RBP17.64■□□□□ 0.41
VPS28-212ENST00000530836 DCAF16Q9NXF7 216 aa17.64■□□□□ 0.41
VPS28-212ENST00000530836 TEX15Q9BXT5 2789 aa17.64■□□□□ 0.41
VPS28-212ENST00000530836 C9orf170A2RU37 121 aa17.63■□□□□ 0.41
VPS28-212ENST00000530836 ZNF205O95201 554 aa17.63■□□□□ 0.41
VPS28-212ENST00000530836 DUS4LO95620 317 aaKnown RBP17.63■□□□□ 0.41
VPS28-212ENST00000530836 CDKN1AP38936 164 aa17.63■□□□□ 0.41
VPS28-212ENST00000530836 BAMBIQ13145 260 aa17.63■□□□□ 0.41
VPS28-212ENST00000530836 PPP1R1AQ13522 171 aa17.63■□□□□ 0.41
VPS28-212ENST00000530836 H1FOOQ8IZA3 346 aaPredicted RBP17.63■□□□□ 0.41
VPS28-212ENST00000530836 TCTE3Q8IZS6 198 aa17.63■□□□□ 0.41
VPS28-212ENST00000530836 C12orf45Q8N5I9 185 aaPredicted RBP17.63■□□□□ 0.41
VPS28-212ENST00000530836 OR52B4Q8NGK2 314 aa17.63■□□□□ 0.41
VPS28-212ENST00000530836 TOMM40LQ969M1 308 aa17.63■□□□□ 0.41
VPS28-212ENST00000530836 CCL13Q99616 98 aa17.63■□□□□ 0.41
VPS28-212ENST00000530836 FXYD6Q9H0Q3 95 aa17.63■□□□□ 0.41
VPS28-212ENST00000530836 SPINT2O43291 252 aa17.62■□□□□ 0.41
VPS28-212ENST00000530836 IL2RGP31785 369 aa17.62■□□□□ 0.41
VPS28-212ENST00000530836 RBMXP38159 391 aaKnown RBP17.62■□□□□ 0.41
VPS28-212ENST00000530836 FXYD4P59646 89 aa17.62■□□□□ 0.41
VPS28-212ENST00000530836 CD83Q01151 205 aa17.62■□□□□ 0.41
VPS28-212ENST00000530836 EDDM3AQ14507 147 aa17.62■□□□□ 0.41
VPS28-212ENST00000530836 ABCA11PQ4W5N1 156 aa17.62■□□□□ 0.41
VPS28-212ENST00000530836 FAM185AQ8N0U4 392 aa17.62■□□□□ 0.41
VPS28-212ENST00000530836 IL1F10Q8WWZ1 152 aa17.62■□□□□ 0.41
VPS28-212ENST00000530836 PHB2Q99623 299 aa17.62■□□□□ 0.41
VPS28-212ENST00000530836 RSRP1Q9BUV0 290 aa17.62■□□□□ 0.41
VPS28-212ENST00000530836 GSX2Q9BZM3 304 aa17.62■□□□□ 0.41
VPS28-212ENST00000530836 KAAG1Q9UBP8 84 aa17.62■□□□□ 0.41
VPS28-212ENST00000530836 OR2W1Q9Y3N9 320 aa17.62■□□□□ 0.41
VPS28-212ENST00000530836 TANC2Q9HCD6 1990 aa17.62■□□□□ 0.41
VPS28-212ENST00000530836 C12orf77C9JDV5 145 aa17.61■□□□□ 0.41
VPS28-212ENST00000530836 TMPRSS2O15393 492 aa17.61■□□□□ 0.41
VPS28-212ENST00000530836 HSPA12AO43301 675 aa17.61■□□□□ 0.41
VPS28-212ENST00000530836 HEXAP06865 529 aa17.61■□□□□ 0.41
VPS28-212ENST00000530836 ANXA3P12429 323 aa17.61■□□□□ 0.41
VPS28-212ENST00000530836 VAMP1P23763 118 aa17.61■□□□□ 0.41
VPS28-212ENST00000530836 CCDC71LQ8N9Z2 235 aa17.61■□□□□ 0.41
VPS28-212ENST00000530836 OR11H7Q8NGC8 314 aa17.61■□□□□ 0.41
VPS28-212ENST00000530836 MITD1Q8WV92 249 aa17.61■□□□□ 0.41
VPS28-212ENST00000530836 RANGRFQ9HD47 186 aaPredicted RBP17.61■□□□□ 0.41
VPS28-212ENST00000530836 CCDC168Q8NDH2 2452 aa17.61■□□□□ 0.41
VPS28-212ENST00000530836 TRAV39A0A0B4J263 110 aa17.61■□□□□ 0.41
VPS28-212ENST00000530836 TNFRSF13BO14836 293 aaPredicted RBP17.61■□□□□ 0.41
VPS28-212ENST00000530836 SFT2D2O95562 160 aa17.61■□□□□ 0.41
VPS28-212ENST00000530836 HBZP02008 142 aa17.61■□□□□ 0.41
VPS28-212ENST00000530836 EDDM3BP56851 147 aa17.61■□□□□ 0.41
VPS28-212ENST00000530836 HTD2P86397 168 aa17.61■□□□□ 0.41
VPS28-212ENST00000530836 CD300CQ08708 224 aa17.61■□□□□ 0.41
VPS28-212ENST00000530836 USF3Q68DE3 2245 aa17.61■□□□□ 0.41
VPS28-212ENST00000530836 SGPP2Q8IWX5 399 aa17.61■□□□□ 0.41
VPS28-212ENST00000530836 LRRC75A-AS1Q8N1F1 130 aa17.61■□□□□ 0.41
VPS28-212ENST00000530836 PRR18Q8N4B5 295 aa17.61■□□□□ 0.41
VPS28-212ENST00000530836 OR2AK2Q8NG84 335 aa17.61■□□□□ 0.41
VPS28-212ENST00000530836 MRGPRDQ8TDS7 321 aa17.61■□□□□ 0.41
VPS28-212ENST00000530836 ASB13Q8WXK3 278 aa17.61■□□□□ 0.41
VPS28-212ENST00000530836 TMEM230Q96A57 120 aa17.61■□□□□ 0.41
VPS28-212ENST00000530836 FOXC2Q99958 501 aa17.61■□□□□ 0.41
VPS28-212ENST00000530836 TOLLIPQ9H0E2 274 aa17.61■□□□□ 0.41
VPS28-212ENST00000530836 A0A0B4J2A0 478 aa17.6■□□□□ 0.41
VPS28-212ENST00000530836 CD34P28906 385 aa17.6■□□□□ 0.41
VPS28-212ENST00000530836 OR13A1Q8NGR1 328 aa17.6■□□□□ 0.41
VPS28-212ENST00000530836 FAM216AQ8WUB2 273 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms