RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 DNAH7Q8WXX0 4024 aa18.37■□□□□ 0.53
CPSF1-202ENST00000527827 FADS2O95864 444 aaKnown RBP18.36■□□□□ 0.53
CPSF1-202ENST00000527827 MT-ND4P03905 459 aa18.36■□□□□ 0.53
CPSF1-202ENST00000527827 ZNF137PP52743 207 aa18.36■□□□□ 0.53
CPSF1-202ENST00000527827 KIAA0141Q14154 515 aaPredicted RBP18.36■□□□□ 0.53
CPSF1-202ENST00000527827 ASPHD1Q5U4P2 390 aa18.36■□□□□ 0.53
CPSF1-202ENST00000527827 ZNF497Q6ZNH5 498 aa18.36■□□□□ 0.53
CPSF1-202ENST00000527827 SLC25A48Q6ZT89 311 aaKnown RBP18.36■□□□□ 0.53
CPSF1-202ENST00000527827 RYR2Q92736 4967 aa18.36■□□□□ 0.53
CPSF1-202ENST00000527827 TENM2Q9NT68 2774 aa18.36■□□□□ 0.53
CPSF1-202ENST00000527827 ZNF134P52741 427 aa18.35■□□□□ 0.53
CPSF1-202ENST00000527827 ATAD3CQ5T2N8 411 aa18.35■□□□□ 0.53
CPSF1-202ENST00000527827 LINC00596Q86U02 117 aa18.35■□□□□ 0.53
CPSF1-202ENST00000527827 AIPO00170 330 aa18.34■□□□□ 0.53
CPSF1-202ENST00000527827 TXNL1O43396 289 aa18.34■□□□□ 0.53
CPSF1-202ENST00000527827 CSTBP04080 98 aaKnown RBP18.34■□□□□ 0.53
CPSF1-202ENST00000527827 SERPINA2P20848 420 aa18.34■□□□□ 0.53
CPSF1-202ENST00000527827 PPIFP30405 207 aaKnown RBP18.34■□□□□ 0.53
CPSF1-202ENST00000527827 ZNF93P35789 620 aaPredicted RBP18.34■□□□□ 0.53
CPSF1-202ENST00000527827 ALDH3A2P51648 485 aa18.34■□□□□ 0.53
CPSF1-202ENST00000527827 MPV17LQ2QL34 196 aa18.34■□□□□ 0.53
CPSF1-202ENST00000527827 CT45A1Q5HYN5 189 aa18.34■□□□□ 0.53
CPSF1-202ENST00000527827 CASC10Q5T4H9 136 aa18.34■□□□□ 0.53
CPSF1-202ENST00000527827 DDI2Q5TDH0 399 aa18.34■□□□□ 0.53
CPSF1-202ENST00000527827 XAF1Q6GPH4 301 aa18.34■□□□□ 0.53
CPSF1-202ENST00000527827 OR52I1Q8NGK6 324 aa18.34■□□□□ 0.53
CPSF1-202ENST00000527827 CT45A3Q8NHU0 189 aa18.34■□□□□ 0.53
CPSF1-202ENST00000527827 MUC7Q8TAX7 377 aa18.34■□□□□ 0.53
CPSF1-202ENST00000527827 GPR148Q8TDV2 347 aa18.34■□□□□ 0.53
CPSF1-202ENST00000527827 PYDC1Q8WXC3 89 aa18.34■□□□□ 0.53
CPSF1-202ENST00000527827 KLK15Q9H2R5 256 aa18.34■□□□□ 0.53
CPSF1-202ENST00000527827 GNB4Q9HAV0 340 aa18.34■□□□□ 0.53
CPSF1-202ENST00000527827 TMEM138Q9NPI0 162 aa18.34■□□□□ 0.53
CPSF1-202ENST00000527827 GMPPBQ9Y5P6 360 aa18.34■□□□□ 0.53
CPSF1-202ENST00000527827 SMAD5-AS1Q9Y6J3 95 aa18.34■□□□□ 0.53
CPSF1-202ENST00000527827 A0A1W2PP11 408 aa18.33■□□□□ 0.52
CPSF1-202ENST00000527827 C12orf77C9JDV5 145 aa18.33■□□□□ 0.52
CPSF1-202ENST00000527827 I3L521 148 aa18.33■□□□□ 0.52
CPSF1-202ENST00000527827 RASSF2P50749 326 aa18.33■□□□□ 0.52
CPSF1-202ENST00000527827 INSL3P51460 131 aa18.33■□□□□ 0.52
CPSF1-202ENST00000527827 RAB40BQ12829 278 aa18.33■□□□□ 0.52
CPSF1-202ENST00000527827 ZNF491Q8N8L2 437 aa18.33■□□□□ 0.52
CPSF1-202ENST00000527827 RHOXF1Q8NHV9 184 aa18.33■□□□□ 0.52
CPSF1-202ENST00000527827 NEK7Q8TDX7 302 aa18.33■□□□□ 0.52
CPSF1-202ENST00000527827 TMEM106AQ96A25 262 aa18.33■□□□□ 0.52
CPSF1-202ENST00000527827 UBE2E2Q96LR5 201 aa18.33■□□□□ 0.52
CPSF1-202ENST00000527827 ZNF107Q9UII5 783 aaPredicted RBP18.33■□□□□ 0.52
CPSF1-202ENST00000527827 LY86O95711 162 aa18.32■□□□□ 0.52
CPSF1-202ENST00000527827 CD2P06729 351 aa18.32■□□□□ 0.52
CPSF1-202ENST00000527827 OR8U8P0C7N1 319 aa18.32■□□□□ 0.52
CPSF1-202ENST00000527827 LIMS3P0CW19 117 aa18.32■□□□□ 0.52
CPSF1-202ENST00000527827 LIMS4P0CW20 117 aa18.32■□□□□ 0.52
CPSF1-202ENST00000527827 OR5H8P0DN80 308 aa18.32■□□□□ 0.52
CPSF1-202ENST00000527827 SLC2A2P11168 524 aaPredicted RBP18.32■□□□□ 0.52
CPSF1-202ENST00000527827 SBSPONQ8IVN8 264 aa18.32■□□□□ 0.52
CPSF1-202ENST00000527827 OR1N2Q8NGR9 330 aa18.32■□□□□ 0.52
CPSF1-202ENST00000527827 ORAI1Q96D31 301 aa18.32■□□□□ 0.52
CPSF1-202ENST00000527827 CHCHD6Q9BRQ6 235 aa18.32■□□□□ 0.52
CPSF1-202ENST00000527827 MRPS18AQ9NVS2 196 aaKnown RBP18.32■□□□□ 0.52
CPSF1-202ENST00000527827 G3V318 75 aa18.31■□□□□ 0.52
CPSF1-202ENST00000527827 GNB1P62873 340 aa18.31■□□□□ 0.52
CPSF1-202ENST00000527827 RUNX1Q01196 453 aa18.31■□□□□ 0.52
CPSF1-202ENST00000527827 LSAMPQ13449 338 aa18.31■□□□□ 0.52
CPSF1-202ENST00000527827 OR10V1Q8NGI7 309 aa18.31■□□□□ 0.52
CPSF1-202ENST00000527827 S100A13Q99584 98 aa18.31■□□□□ 0.52
CPSF1-202ENST00000527827 PAK1IP1Q9NWT1 392 aaPredicted RBP18.31■□□□□ 0.52
CPSF1-202ENST00000527827 GNG12Q9UBI6 72 aa18.31■□□□□ 0.52
CPSF1-202ENST00000527827 MYF6P23409 242 aa18.3■□□□□ 0.52
CPSF1-202ENST00000527827 BDKRB2P30411 391 aa18.3■□□□□ 0.52
CPSF1-202ENST00000527827 PPP3R1P63098 170 aa18.3■□□□□ 0.52
CPSF1-202ENST00000527827 ZNF616Q08AN1 781 aa18.3■□□□□ 0.52
CPSF1-202ENST00000527827 SLC22A6Q4U2R8 563 aa18.3■□□□□ 0.52
CPSF1-202ENST00000527827 SYT6Q5T7P8 510 aaPredicted RBP18.3■□□□□ 0.52
CPSF1-202ENST00000527827 RPL22L1Q6P5R6 122 aaKnown RBP18.3■□□□□ 0.52
CPSF1-202ENST00000527827 STX19Q8N4C7 294 aa18.3■□□□□ 0.52
CPSF1-202ENST00000527827 CBR4Q8N4T8 237 aa18.3■□□□□ 0.52
CPSF1-202ENST00000527827 OR4K15Q8NH41 348 aa18.3■□□□□ 0.52
CPSF1-202ENST00000527827 OR1L1Q8NH94 360 aa18.3■□□□□ 0.52
CPSF1-202ENST00000527827 Q96MT0 163 aa18.3■□□□□ 0.52
CPSF1-202ENST00000527827 RCHY1Q96PM5 261 aa18.3■□□□□ 0.52
CPSF1-202ENST00000527827 RCC2Q9P258 522 aaKnown RBP18.3■□□□□ 0.52
CPSF1-202ENST00000527827 VSIG4Q9Y279 399 aa18.3■□□□□ 0.52
CPSF1-202ENST00000527827 WSB1Q9Y6I7 421 aa18.3■□□□□ 0.52
CPSF1-202ENST00000527827 H3BNX3 289 aa18.29■□□□□ 0.52
CPSF1-202ENST00000527827 SPINT2O43291 252 aa18.29■□□□□ 0.52
CPSF1-202ENST00000527827 LANCL1O43813 399 aa18.29■□□□□ 0.52
CPSF1-202ENST00000527827 ZNF780AO75290 641 aaPredicted RBP18.29■□□□□ 0.52
CPSF1-202ENST00000527827 IGLV1-40P01703 118 aa18.29■□□□□ 0.52
CPSF1-202ENST00000527827 HBZP02008 142 aa18.29■□□□□ 0.52
CPSF1-202ENST00000527827 GTF2F2P13984 249 aa18.29■□□□□ 0.52
CPSF1-202ENST00000527827 MMDQ15546 238 aa18.29■□□□□ 0.52
CPSF1-202ENST00000527827 TMEM30BQ3MIR4 351 aa18.29■□□□□ 0.52
CPSF1-202ENST00000527827 CCDC58Q4VC31 144 aa18.29■□□□□ 0.52
CPSF1-202ENST00000527827 TMEM65Q6PI78 240 aa18.29■□□□□ 0.52
CPSF1-202ENST00000527827 RITA1Q96K30 269 aa18.29■□□□□ 0.52
CPSF1-202ENST00000527827 OR5B12Q96R08 314 aa18.29■□□□□ 0.52
CPSF1-202ENST00000527827 TRAPPC2LQ9UL33 140 aa18.29■□□□□ 0.52
CPSF1-202ENST00000527827 ATP6V0E1O15342 81 aa18.28■□□□□ 0.52
CPSF1-202ENST00000527827 CIB2O75838 187 aa18.28■□□□□ 0.52
CPSF1-202ENST00000527827 ATP5HO75947 161 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms