RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 NCS1P62166 190 aa11.59□□□□□ -0.55
NUP54-216ENST00000514901 MRPS15P82914 257 aaKnown RBP11.59□□□□□ -0.55
NUP54-216ENST00000514901 SLC9A3R2Q15599 337 aa11.59□□□□□ -0.55
NUP54-216ENST00000514901 CTF1Q16619 201 aa11.59□□□□□ -0.55
NUP54-216ENST00000514901 Q3ZCU0 254 aa11.59□□□□□ -0.55
NUP54-216ENST00000514901 PLAC9Q5JTB6 97 aa11.59□□□□□ -0.55
NUP54-216ENST00000514901 OR9G1Q8NH87 305 aa11.59□□□□□ -0.55
NUP54-216ENST00000514901 LGALS14Q8TCE9 139 aa11.59□□□□□ -0.55
NUP54-216ENST00000514901 FAM216AQ8WUB2 273 aa11.59□□□□□ -0.55
NUP54-216ENST00000514901 PHF21AQ96BD5 680 aa11.59□□□□□ -0.55
NUP54-216ENST00000514901 KCTD12Q96CX2 325 aaKnown RBP11.59□□□□□ -0.55
NUP54-216ENST00000514901 ESM1Q9NQ30 184 aa11.59□□□□□ -0.55
NUP54-216ENST00000514901 ZNRD1Q9P1U0 126 aa11.59□□□□□ -0.55
NUP54-216ENST00000514901 AK3Q9UIJ7 227 aa11.59□□□□□ -0.55
NUP54-216ENST00000514901 SPATA2Q9UM82 520 aa11.59□□□□□ -0.55
NUP54-216ENST00000514901 A0A0A6YYH2 397 aa11.58□□□□□ -0.56
NUP54-216ENST00000514901 BTBD17A6NE02 478 aa11.58□□□□□ -0.56
NUP54-216ENST00000514901 DNAJC9-AS1A6NH13 148 aa11.58□□□□□ -0.56
NUP54-216ENST00000514901 A6NJ64 397 aa11.58□□□□□ -0.56
NUP54-216ENST00000514901 C12orf77C9JDV5 145 aa11.58□□□□□ -0.56
NUP54-216ENST00000514901 HOXA3O43365 443 aaPredicted RBP11.58□□□□□ -0.56
NUP54-216ENST00000514901 IGLV1-47P01700 117 aa11.58□□□□□ -0.56
NUP54-216ENST00000514901 HBZP02008 142 aa11.58□□□□□ -0.56
NUP54-216ENST00000514901 CEACAM3P40198 252 aa11.58□□□□□ -0.56
NUP54-216ENST00000514901 IER3P46695 156 aa11.58□□□□□ -0.56
NUP54-216ENST00000514901 UBA52P62987 128 aaKnown RBP11.58□□□□□ -0.56
NUP54-216ENST00000514901 ZNF880Q6PDB4 577 aa11.58□□□□□ -0.56
NUP54-216ENST00000514901 OR5R1Q8NH85 324 aa11.58□□□□□ -0.56
NUP54-216ENST00000514901 AJUBAQ96IF1 538 aa11.58□□□□□ -0.56
NUP54-216ENST00000514901 CMSS1Q9BQ75 279 aaKnown RBP11.58□□□□□ -0.56
NUP54-216ENST00000514901 BCL7BQ9BQE9 202 aa11.58□□□□□ -0.56
NUP54-216ENST00000514901 TAF9BQ9HBM6 251 aa11.58□□□□□ -0.56
NUP54-216ENST00000514901 ZNF286AQ9HBT8 521 aa11.58□□□□□ -0.56
NUP54-216ENST00000514901 C12orf4Q9NQ89 552 aa11.58□□□□□ -0.56
NUP54-216ENST00000514901 RHBDL2Q9NX52 303 aa11.58□□□□□ -0.56
NUP54-216ENST00000514901 GFOD1Q9NXC2 390 aa11.58□□□□□ -0.56
NUP54-216ENST00000514901 DPM3Q9P2X0 92 aa11.58□□□□□ -0.56
NUP54-216ENST00000514901 LEUTXA8MZ59 168 aa11.57□□□□□ -0.56
NUP54-216ENST00000514901 J3QR06 171 aa11.57□□□□□ -0.56
NUP54-216ENST00000514901 SDCBPO00560 298 aaPredicted RBP11.57□□□□□ -0.56
NUP54-216ENST00000514901 RNASE1P07998 156 aaKnown RBP11.57□□□□□ -0.56
NUP54-216ENST00000514901 CD3GP09693 182 aa11.57□□□□□ -0.56
NUP54-216ENST00000514901 HIST1H1DP16402 221 aaKnown RBP11.57□□□□□ -0.56
NUP54-216ENST00000514901 RORCP51449 518 aa11.57□□□□□ -0.56
NUP54-216ENST00000514901 LOXL3P58215 753 aa11.57□□□□□ -0.56
NUP54-216ENST00000514901 HTD2P86397 168 aa11.57□□□□□ -0.56
NUP54-216ENST00000514901 LTC4SQ16873 150 aa11.57□□□□□ -0.56
NUP54-216ENST00000514901 MOGAT2Q3SYC2 334 aa11.57□□□□□ -0.56
NUP54-216ENST00000514901 C16orf87Q6PH81 154 aa11.57□□□□□ -0.56
NUP54-216ENST00000514901 BAIAP2L2Q6UXY1 529 aa11.57□□□□□ -0.56
NUP54-216ENST00000514901 C8orf31Q8N9H6 132 aa11.57□□□□□ -0.56
NUP54-216ENST00000514901 OR4P4Q8NGL7 312 aa11.57□□□□□ -0.56
NUP54-216ENST00000514901 NDNFQ8TB73 568 aa11.57□□□□□ -0.56
NUP54-216ENST00000514901 RAB2BQ8WUD1 216 aa11.57□□□□□ -0.56
NUP54-216ENST00000514901 GALMQ96C23 342 aa11.57□□□□□ -0.56
NUP54-216ENST00000514901 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.57□□□□□ -0.56
NUP54-216ENST00000514901 PSG11Q9UQ72 335 aa11.57□□□□□ -0.56
NUP54-216ENST00000514901 KCNK7Q9Y2U2 307 aa11.57□□□□□ -0.56
NUP54-216ENST00000514901 AMMECR1Q9Y4X0 333 aaPredicted RBP11.57□□□□□ -0.56
NUP54-216ENST00000514901 FBN1P35555 2871 aaKnown RBP11.57□□□□□ -0.56
NUP54-216ENST00000514901 RNF212BA8MTL3 300 aa11.56□□□□□ -0.56
NUP54-216ENST00000514901 VGLL3A8MV65 326 aa11.56□□□□□ -0.56
NUP54-216ENST00000514901 BUB1B-PAK6H3BSN5 160 aa11.56□□□□□ -0.56
NUP54-216ENST00000514901 MFNGO00587 321 aa11.56□□□□□ -0.56
NUP54-216ENST00000514901 GSTP1P09211 210 aaKnown RBP11.56□□□□□ -0.56
NUP54-216ENST00000514901 GNB3P16520 340 aa11.56□□□□□ -0.56
NUP54-216ENST00000514901 ARHGDIBP52566 201 aa11.56□□□□□ -0.56
NUP54-216ENST00000514901 TMBIM6P55061 237 aa11.56□□□□□ -0.56
NUP54-216ENST00000514901 HMGN3Q15651 99 aa11.56□□□□□ -0.56
NUP54-216ENST00000514901 LRRC75BQ2VPJ9 315 aa11.56□□□□□ -0.56
NUP54-216ENST00000514901 HLA-DRB5Q30154 266 aa11.56□□□□□ -0.56
NUP54-216ENST00000514901 CDNFQ49AH0 187 aa11.56□□□□□ -0.56
NUP54-216ENST00000514901 LY6G6FQ5SQ64 297 aa11.56□□□□□ -0.56
NUP54-216ENST00000514901 STEAP3Q658P3 488 aa11.56□□□□□ -0.56
NUP54-216ENST00000514901 LHFPL4Q7Z7J7 247 aa11.56□□□□□ -0.56
NUP54-216ENST00000514901 CLVS1Q8IUQ0 354 aaPredicted RBP11.56□□□□□ -0.56
NUP54-216ENST00000514901 PRR18Q8N4B5 295 aa11.56□□□□□ -0.56
NUP54-216ENST00000514901 LINC00311Q8N616 119 aa11.56□□□□□ -0.56
NUP54-216ENST00000514901 OR5H6Q8NGV6 325 aa11.56□□□□□ -0.56
NUP54-216ENST00000514901 OR1L1Q8NH94 360 aa11.56□□□□□ -0.56
NUP54-216ENST00000514901 SETD6Q8TBK2 473 aa11.56□□□□□ -0.56
NUP54-216ENST00000514901 C17orf50Q8WW18 174 aa11.56□□□□□ -0.56
NUP54-216ENST00000514901 ACOT12Q8WYK0 555 aa11.56□□□□□ -0.56
NUP54-216ENST00000514901 SSX3Q99909 188 aa11.56□□□□□ -0.56
NUP54-216ENST00000514901 NAA50Q9GZZ1 169 aaKnown RBP11.56□□□□□ -0.56
NUP54-216ENST00000514901 MMP28Q9H239 520 aa11.56□□□□□ -0.56
NUP54-216ENST00000514901 DCSTAMPQ9H295 470 aa11.56□□□□□ -0.56
NUP54-216ENST00000514901 Q9N2K0 584 aa11.56□□□□□ -0.56
NUP54-216ENST00000514901 OR2S2Q9NQN1 319 aa11.56□□□□□ -0.56
NUP54-216ENST00000514901 DIABLOQ9NR28 239 aa11.56□□□□□ -0.56
NUP54-216ENST00000514901 GNG12Q9UBI6 72 aa11.56□□□□□ -0.56
NUP54-216ENST00000514901 FAM172BPA6NC97 362 aa11.55□□□□□ -0.56
NUP54-216ENST00000514901 OOSP1A8MZH6 123 aa11.55□□□□□ -0.56
NUP54-216ENST00000514901 RGS11O94810 467 aa11.55□□□□□ -0.56
NUP54-216ENST00000514901 TALDO1P37837 337 aa11.55□□□□□ -0.56
NUP54-216ENST00000514901 DYNLT3P51808 116 aa11.55□□□□□ -0.56
NUP54-216ENST00000514901 RPL15P61313 204 aaKnown RBP11.55□□□□□ -0.56
NUP54-216ENST00000514901 PITPNAQ00169 270 aa11.55□□□□□ -0.56
NUP54-216ENST00000514901 ARFRP1Q13795 201 aa11.55□□□□□ -0.56
NUP54-216ENST00000514901 SSX2Q16385 188 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms