RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 LIAT1Q6ZQX7 453 aa11.46□□□□□ -0.58
TCOF1-213ENST00000514442 APCDD1LQ8NCL9 501 aa11.46□□□□□ -0.58
TCOF1-213ENST00000514442 CISD2Q8N5K1 135 aaKnown RBP11.46□□□□□ -0.58
TCOF1-213ENST00000514442 DNASE2BQ8WZ79 361 aa11.46□□□□□ -0.58
TCOF1-213ENST00000514442 STARD4Q96DR4 205 aa11.46□□□□□ -0.58
TCOF1-213ENST00000514442 TRPM7Q96QT4 1865 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 C3orf85A0A1B0GTC6 90 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 C17orf51A8MQB3 221 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 MMP9P14780 707 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 PECRQ9BY49 303 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 PATJQ8NI35 1801 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 CACNA1IQ9P0X4 2223 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 ARID1AO14497 2285 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 K7ERU9 68 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 TSPAN2O60636 221 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 HIST1H2BKO60814 126 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 HIST1H2BJP06899 126 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 FSTP19883 344 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 HIST1H2BOP23527 126 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 HIST1H2BBP33778 126 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 HIST1H2BDP58876 126 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 HIST1H2BCP62807 126 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 HIST2H2BEQ16778 126 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.45□□□□□ -0.58
TCOF1-213ENST00000514442 DNLZQ5SXM8 178 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 MRGPRGQ86SM5 289 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 HIST1H2BHQ93079 126 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 HIST1H2BNQ99877 126 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 HIST1H2BMQ99879 126 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 SF3B5Q9BWJ5 86 aaKnown RBP11.45□□□□□ -0.58
TCOF1-213ENST00000514442 PDCD11Q14690 1871 aaKnown RBP11.45□□□□□ -0.58
TCOF1-213ENST00000514442 IGHV1-45A0A0A0MS14 117 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 SMIM10L1P0DMW3 83 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 FHITP49789 147 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 STPG1Q5TH74 334 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 HIST3H2BBQ8N257 126 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 SMIM10Q96HG1 83 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 S1PR3Q99500 378 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 MSL2Q9HCI7 577 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 A0A0G2JMZ2 1700 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 LRRC37A2A6NM11 1700 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 SCN2AQ99250 2005 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 B4E171 279 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 J3QR89 54 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 TIAF1O95411 115 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 HRASP01112 189 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 BCL2P10415 239 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 TSPAN7P41732 249 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 PMP22Q01453 160 aa11.45□□□□□ -0.58
TCOF1-213ENST00000514442 FAM186AA6NE01 2351 aa11.44□□□□□ -0.58
TCOF1-213ENST00000514442 A0A0J9YW62 118 aa11.44□□□□□ -0.58
TCOF1-213ENST00000514442 MARCH11A6NNE9 402 aa11.44□□□□□ -0.58
TCOF1-213ENST00000514442 KRASP01116 189 aa11.44□□□□□ -0.58
TCOF1-213ENST00000514442 NGFP01138 241 aa11.44□□□□□ -0.58
TCOF1-213ENST00000514442 GPR35Q9HC97 309 aa11.44□□□□□ -0.58
TCOF1-213ENST00000514442 UBE2L5PA0A1B0GUS4 154 aa11.44□□□□□ -0.58
TCOF1-213ENST00000514442 TMEM30CPA0ZSE6 113 aa11.44□□□□□ -0.58
TCOF1-213ENST00000514442 DHRS7CA6NNS2 312 aa11.44□□□□□ -0.58
TCOF1-213ENST00000514442 FCN1O00602 326 aa11.44□□□□□ -0.58
TCOF1-213ENST00000514442 RPS16P62249 146 aaKnown RBP11.44□□□□□ -0.58
TCOF1-213ENST00000514442 JOSD1Q15040 202 aaPredicted RBP11.44□□□□□ -0.58
TCOF1-213ENST00000514442 CEBPEQ15744 281 aa11.44□□□□□ -0.58
TCOF1-213ENST00000514442 PET117Q6UWS5 81 aa11.44□□□□□ -0.58
TCOF1-213ENST00000514442 OR13G1Q8NGZ3 307 aa11.44□□□□□ -0.58
TCOF1-213ENST00000514442 TTTY12Q9BZ98 90 aa11.44□□□□□ -0.58
TCOF1-213ENST00000514442 FOXJ2Q9P0K8 574 aa11.44□□□□□ -0.58
TCOF1-213ENST00000514442 C3orf80F5H4A9 247 aa11.44□□□□□ -0.58
TCOF1-213ENST00000514442 ZIC2O95409 532 aaPredicted RBP11.44□□□□□ -0.58
TCOF1-213ENST00000514442 LYZL2Q7Z4W2 148 aa11.44□□□□□ -0.58
TCOF1-213ENST00000514442 CLDN23Q96B33 292 aa11.44□□□□□ -0.58
TCOF1-213ENST00000514442 C5orf66Q9H5L9 145 aa11.44□□□□□ -0.58
TCOF1-213ENST00000514442 KIAA1324LA8MWY0 1029 aaPredicted RBP11.44□□□□□ -0.58
TCOF1-213ENST00000514442 IGHV3-13P01766 116 aa11.44□□□□□ -0.58
TCOF1-213ENST00000514442 IGHV3-7P01780 117 aa11.44□□□□□ -0.58
TCOF1-213ENST00000514442 MELTFP08582 738 aa11.44□□□□□ -0.58
TCOF1-213ENST00000514442 SP9P0CG40 484 aa11.44□□□□□ -0.58
TCOF1-213ENST00000514442 PMELP40967 661 aa11.44□□□□□ -0.58
TCOF1-213ENST00000514442 ATP6V1FQ16864 119 aa11.44□□□□□ -0.58
TCOF1-213ENST00000514442 STUMQ69YW2 141 aa11.44□□□□□ -0.58
TCOF1-213ENST00000514442 H1FOOQ8IZA3 346 aaPredicted RBP11.44□□□□□ -0.58
TCOF1-213ENST00000514442 NEIL1Q96FI4 390 aaPredicted RBP11.44□□□□□ -0.58
TCOF1-213ENST00000514442 RAB40CQ96S21 281 aa11.44□□□□□ -0.58
TCOF1-213ENST00000514442 SH3BGRL3Q9H299 93 aa11.44□□□□□ -0.58
TCOF1-213ENST00000514442 IGHV3-43A0A0B4J1X8 118 aa11.43□□□□□ -0.58
TCOF1-213ENST00000514442 ASAH2BP0C7U1 165 aa11.43□□□□□ -0.58
TCOF1-213ENST00000514442 FTH1P19P0C7X4 201 aa11.43□□□□□ -0.58
TCOF1-213ENST00000514442 IGHV3-43DP0DP04 118 aa11.43□□□□□ -0.58
TCOF1-213ENST00000514442 SRP14P37108 136 aaKnown RBP11.43□□□□□ -0.58
TCOF1-213ENST00000514442 LSM6P62312 80 aaKnown RBP11.43□□□□□ -0.58
TCOF1-213ENST00000514442 LRRC29Q8WV35 223 aa11.43□□□□□ -0.58
TCOF1-213ENST00000514442 BARX1Q9HBU1 254 aaPredicted RBP11.43□□□□□ -0.58
TCOF1-213ENST00000514442 DNAJC4Q9NNZ3 241 aa11.43□□□□□ -0.58
TCOF1-213ENST00000514442 RNF24Q9Y225 148 aa11.43□□□□□ -0.58
TCOF1-213ENST00000514442 H0Y8G0 127 aa11.43□□□□□ -0.58
TCOF1-213ENST00000514442 SP1P08047 785 aa11.43□□□□□ -0.58
TCOF1-213ENST00000514442 AMTP48728 403 aa11.43□□□□□ -0.58
TCOF1-213ENST00000514442 THBS3P49746 956 aa11.43□□□□□ -0.58
TCOF1-213ENST00000514442 UBE2G2P60604 165 aa11.43□□□□□ -0.58
TCOF1-213ENST00000514442 RTL8BQ17RB0 113 aa11.43□□□□□ -0.58
TCOF1-213ENST00000514442 PRR27Q6MZM9 219 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms