RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 ATP5IP56385 69 aaPredicted RBP3.68□□□□□ -1.82
VCAN-209ENST00000513016 RBM11P57052 281 aaKnown RBP3.68□□□□□ -1.82
VCAN-209ENST00000513016 TBC1D26Q86UD7 250 aa3.68□□□□□ -1.82
VCAN-209ENST00000513016 MYPOPQ86VE0 399 aaPredicted RBP3.68□□□□□ -1.82
VCAN-209ENST00000513016 ST6GALNAC3Q8NDV1 305 aa3.68□□□□□ -1.82
VCAN-209ENST00000513016 NKX6-2Q9C056 277 aaPredicted RBP3.68□□□□□ -1.82
VCAN-209ENST00000513016 CALYQ9NYX4 217 aa3.68□□□□□ -1.82
VCAN-209ENST00000513016 DOK5Q9P104 306 aa3.68□□□□□ -1.82
VCAN-209ENST00000513016 H3BP45 60 aa3.68□□□□□ -1.82
VCAN-209ENST00000513016 GEMIN2O14893 280 aaKnown RBP3.68□□□□□ -1.82
VCAN-209ENST00000513016 TM4SF5O14894 197 aa3.68□□□□□ -1.82
VCAN-209ENST00000513016 IGHV3-13P01766 116 aa3.68□□□□□ -1.82
VCAN-209ENST00000513016 IGHV3-7P01780 117 aa3.68□□□□□ -1.82
VCAN-209ENST00000513016 PGA4P0DJD7 388 aa3.68□□□□□ -1.82
VCAN-209ENST00000513016 SLC25A16P16260 332 aa3.68□□□□□ -1.82
VCAN-209ENST00000513016 USF1P22415 310 aaPredicted RBP3.68□□□□□ -1.82
VCAN-209ENST00000513016 MEF2CQ06413 473 aaPredicted RBP3.68□□□□□ -1.82
VCAN-209ENST00000513016 FAM27E3Q08E93 113 aa3.68□□□□□ -1.82
VCAN-209ENST00000513016 HAGHQ16775 308 aa3.68□□□□□ -1.82
VCAN-209ENST00000513016 ECM29Q5VYK3 1845 aa3.68□□□□□ -1.82
VCAN-209ENST00000513016 A0A1B0GU03 582 aa3.68□□□□□ -1.82
VCAN-209ENST00000513016 H0Y8G0 127 aa3.68□□□□□ -1.82
VCAN-209ENST00000513016 CST7O76096 145 aa3.68□□□□□ -1.82
VCAN-209ENST00000513016 NDUFB6O95139 128 aa3.68□□□□□ -1.82
VCAN-209ENST00000513016 ZNF735P0CB33 412 aa3.68□□□□□ -1.82
VCAN-209ENST00000513016 FABP9Q0Z7S8 132 aa3.68□□□□□ -1.82
VCAN-209ENST00000513016 Q6ZN92 141 aa3.68□□□□□ -1.82
VCAN-209ENST00000513016 SLC35E3Q7Z769 313 aa3.68□□□□□ -1.82
VCAN-209ENST00000513016 TMEM123Q8N131 208 aa3.68□□□□□ -1.82
VCAN-209ENST00000513016 NRIP2Q9BQI9 281 aa3.68□□□□□ -1.82
VCAN-209ENST00000513016 QSER1Q2KHR3 1735 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 ODAMA1E959 279 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 NTN3O00634 580 aaPredicted RBP3.67□□□□□ -1.82
VCAN-209ENST00000513016 PPYP01298 95 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 INHBBP09529 407 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 HLA-GP17693 338 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 SLC6A1P30531 599 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 VDAC2P45880 294 aaPredicted RBP3.67□□□□□ -1.82
VCAN-209ENST00000513016 MESP2Q0VG99 397 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 KLF9Q13886 244 aaPredicted RBP3.67□□□□□ -1.82
VCAN-209ENST00000513016 PNKDQ8N490 385 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 ZNF738Q8NE65 137 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 YIPF6Q96EC8 236 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 MEGF10Q96KG7 1140 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 SIGLEC12Q96PQ1 595 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 ZNF586Q9NXT0 402 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 TAF1P21675 1872 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 KIAA1551Q9HCM1 1747 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 LAMA4Q16363 1823 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 LOC102723996A0A087X1L8 192 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 A0A1B0GTL3 188 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 NPIPB13A6NJU9 1138 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 NPIPB4C9JG80 1138 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 ADAM10O14672 748 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 CYB5R3P00387 301 aaPredicted RBP3.67□□□□□ -1.82
VCAN-209ENST00000513016 NPPCP23582 126 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 TFPI2P48307 235 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 GNG4P50150 75 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 SP6Q3SY56 376 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 KHDC3LQ587J8 217 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 C19orf54Q5BKX5 351 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 DMRTC1Q5HYR2 192 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 FAM27D1Q5T7N8 215 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 AMMECR1LQ6DCA0 310 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 MRPL14Q6P1L8 145 aaKnown RBP3.67□□□□□ -1.82
VCAN-209ENST00000513016 OR2C3Q8N628 320 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 ADAD2Q8NCV1 583 aaKnown RBP3.67□□□□□ -1.82
VCAN-209ENST00000513016 RXFP4Q8TDU9 374 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 SNRNP40Q96DI7 357 aaKnown RBP3.67□□□□□ -1.82
VCAN-209ENST00000513016 SCMH1Q96GD3 660 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 TMPRSS5Q9H3S3 457 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 MEX3AA1L020 520 aaKnown RBP3.67□□□□□ -1.82
VCAN-209ENST00000513016 MFSD2BA6NFX1 497 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 CTAG2O75638 210 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 CST4P01036 141 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 THBDP07204 575 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 ASAH2BP0C7U1 165 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 TUSC1Q2TAM9 212 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 ZAR1Q86SH2 424 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 OR10G4Q8NGN3 311 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 OR10G9Q8NGN4 311 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 OR10G7Q8NGN6 311 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 TMEM54Q969K7 222 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 PGLYRP3Q96LB9 341 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 RBM14Q96PK6 669 aaKnown RBP3.67□□□□□ -1.82
VCAN-209ENST00000513016 CLCF1Q9UBD9 225 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 CCL27Q9Y4X3 112 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 MMP24Q9Y5R2 645 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 PLXNB2O15031 1838 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 LY75O60449 1722 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 FFAR1O14842 300 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 HBZP02008 142 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 GNLYP22749 145 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 MAGEB1P43366 347 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 RELBQ01201 579 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 PLAURQ03405 335 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 DMKNQ6E0U4 476 aaPredicted RBP3.67□□□□□ -1.82
VCAN-209ENST00000513016 PRSS54Q6PEW0 395 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 SEZ6L2Q6UXD5 910 aa3.67□□□□□ -1.82
VCAN-209ENST00000513016 FAM90A1Q86YD7 464 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms