RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 IL24Q13007 206 aa7.9□□□□□ -1.15
LIMCH1-215ENST00000512632 ABLIM2Q6H8Q1 611 aa7.9□□□□□ -1.15
LIMCH1-215ENST00000512632 ZNF383Q8NA42 475 aa7.9□□□□□ -1.15
LIMCH1-215ENST00000512632 OR1K1Q8NGR3 316 aa7.9□□□□□ -1.15
LIMCH1-215ENST00000512632 SCGB1C1Q8TD33 95 aa7.9□□□□□ -1.15
LIMCH1-215ENST00000512632 SPSB4Q96A44 273 aa7.9□□□□□ -1.15
LIMCH1-215ENST00000512632 PRDM14Q9GZV8 571 aa7.9□□□□□ -1.15
LIMCH1-215ENST00000512632 OR1A1Q9P1Q5 309 aa7.9□□□□□ -1.15
LIMCH1-215ENST00000512632 NCOR1O75376 2440 aa7.9□□□□□ -1.15
LIMCH1-215ENST00000512632 HMGB3O15347 200 aaKnown RBP7.9□□□□□ -1.15
LIMCH1-215ENST00000512632 PPP1R32Q7Z5V6 425 aa7.9□□□□□ -1.15
LIMCH1-215ENST00000512632 PRDM6Q9NQX0 595 aa7.9□□□□□ -1.15
LIMCH1-215ENST00000512632 MAS1LP35410 378 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 ELLP55199 621 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 FOXO1Q12778 655 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 TRIM61Q5EBN2 209 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 SPATA46Q5T0L3 261 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 ZNF880Q6PDB4 577 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 LINC00469Q8N7U9 141 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 OR10J5Q8NHC4 309 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 MAFAQ8NHW3 353 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 ARHGAP21Q5T5U3 1957 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 CYTIPO60759 359 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 HBE1P02100 147 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 GLIPR1P48060 266 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 CYB561P49447 251 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 BAXQ07812 192 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 CLEC12BQ2HXU8 276 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 CEACAM21Q3KPI0 293 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 ZNF787Q6DD87 383 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 OR2T2Q6IF00 324 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 COLCA1Q6ZS62 124 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 HES7Q9BYE0 225 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 A0A1W2PR80 420 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 CD300LBA8K4G0 201 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 H0Y980 276 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 WDR1O75083 606 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 NDUFS6O75380 124 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 RHBDL1O75783 438 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 SOD3P08294 240 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 KHDC3LQ587J8 217 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 SPANXN5Q5MJ07 72 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 ZNF295-AS1Q8N0V1 137 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 OR5D13Q8NGL4 314 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 MRPL30Q8TCC3 161 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 CLDN23Q96B33 292 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 RBMXL1Q96E39 390 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 FAM210BQ96KR6 192 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 SSX3Q99909 188 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 PLK3Q9H4B4 646 aa7.89□□□□□ -1.15
LIMCH1-215ENST00000512632 FAM166BA8MTA8 275 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 CEBPZOSA8MTT3 80 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 TRGC1P0CF51 173 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 MMP9P14780 707 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 NKX6-1P78426 367 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 C3AR1Q16581 482 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 BEND4Q6ZU67 534 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 FRZBQ92765 325 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 TECTBQ96PL2 329 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 LRFN1Q9P244 771 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 KCNS2Q9ULS6 477 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 OR2W1Q9Y3N9 320 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 PPP1R2P9O14990 202 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 DFFBO76075 338 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 RPS16P62249 146 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 Q8NFD4 153 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 ABHD5Q8WTS1 349 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 PILRBQ9UKJ0 227 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 TRAV24A0A0B4J272 114 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 LOC102723971A0A1B0GUV8 181 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 CTXN2P0C2S0 81 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 S100GP29377 79 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 FAM90A2PQ658T7 463 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 SSX7Q7RTT5 188 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 SMOC1Q9H4F8 434 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 PSENENQ9NZ42 101 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 DOCK11Q5JSL3 2073 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 CLEC18AA5D8T8 446 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 SYNGR2O43760 224 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 IGKV1-39P01597 117 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 IGKV1D-39P04432 117 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 CYC1P08574 325 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 CA6P23280 308 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 LURAP1LQ8IV03 231 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 CLEC18CQ8NCF0 446 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 OR8G5Q8NG78 346 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 TCFL5Q9UL49 500 aa7.88□□□□□ -1.15
LIMCH1-215ENST00000512632 PGA5P0DJD9 388 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 FABP4P15090 132 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 ZNF726P1Q15940 193 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 ZNF324BQ6AW86 544 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 SP5Q6BEB4 398 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 OR8G2PQ6IF36 304 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 SLC35E3Q7Z769 313 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 LILRB2Q8N423 598 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 DLL3Q9NYJ7 618 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 NCKAP5O14513 1909 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 DOCK10Q96BY6 2186 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 A0A087WWC5 75 aa7.87□□□□□ -1.15
LIMCH1-215ENST00000512632 FAM90A10PA6NDY2 464 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms