RNA–Protein interactions for RNA: ENST00000509388.5

RNF4-213, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-213ENST00000509388 PRB3Q04118 309 aaPredicted RBP12.15□□□□□ -0.46
RNF4-213ENST00000509388 TMEM30BQ3MIR4 351 aa12.15□□□□□ -0.46
RNF4-213ENST00000509388 ZNF880Q6PDB4 577 aa12.15□□□□□ -0.46
RNF4-213ENST00000509388 IL17RELQ6ZVW7 336 aa12.15□□□□□ -0.46
RNF4-213ENST00000509388 OR1L1Q8NH94 360 aa12.15□□□□□ -0.46
RNF4-213ENST00000509388 TMEM133Q9H2Q1 129 aa12.15□□□□□ -0.46
RNF4-213ENST00000509388 IFT46Q9NQC8 304 aa12.15□□□□□ -0.46
RNF4-213ENST00000509388 OR2S2Q9NQN1 319 aa12.15□□□□□ -0.46
RNF4-213ENST00000509388 GNG12Q9UBI6 72 aa12.15□□□□□ -0.46
RNF4-213ENST00000509388 CSPG4Q6UVK1 2322 aa12.15□□□□□ -0.46
RNF4-213ENST00000509388 INAFM1C9JVW0 142 aa12.14□□□□□ -0.47
RNF4-213ENST00000509388 C15orf65H3BRN8 121 aa12.14□□□□□ -0.47
RNF4-213ENST00000509388 MMP23AO75900 390 aa12.14□□□□□ -0.47
RNF4-213ENST00000509388 HLA-DQB1P01920 261 aa12.14□□□□□ -0.47
RNF4-213ENST00000509388 DLX1P56177 255 aa12.14□□□□□ -0.47
RNF4-213ENST00000509388 LGALS4P56470 323 aa12.14□□□□□ -0.47
RNF4-213ENST00000509388 SCGB2A2Q13296 93 aa12.14□□□□□ -0.47
RNF4-213ENST00000509388 HMGN3Q15651 99 aa12.14□□□□□ -0.47
RNF4-213ENST00000509388 SRSF7Q16629 238 aaKnown RBP eCLIP12.14□□□□□ -0.47
RNF4-213ENST00000509388 CHRFAM7AQ494W8 412 aa12.14□□□□□ -0.47
RNF4-213ENST00000509388 PYHIN1Q6K0P9 492 aa12.14□□□□□ -0.47
RNF4-213ENST00000509388 FAM131AQ6UXB0 335 aa12.14□□□□□ -0.47
RNF4-213ENST00000509388 C1orf229Q6ZS94 237 aaPredicted RBP12.14□□□□□ -0.47
RNF4-213ENST00000509388 ABHD12Q8N2K0 398 aa12.14□□□□□ -0.47
RNF4-213ENST00000509388 PNKDQ8N490 385 aa12.14□□□□□ -0.47
RNF4-213ENST00000509388 MAFIPQ8WZ33 124 aa12.14□□□□□ -0.47
RNF4-213ENST00000509388 KIRREL1Q96J84 757 aa12.14□□□□□ -0.47
RNF4-213ENST00000509388 CLEC7AQ9BXN2 247 aa12.14□□□□□ -0.47
RNF4-213ENST00000509388 MS4A7Q9GZW8 240 aaPredicted RBP12.14□□□□□ -0.47
RNF4-213ENST00000509388 LINC00574Q9H8X3 128 aa12.14□□□□□ -0.47
RNF4-213ENST00000509388 SCPEP1Q9HB40 452 aa12.14□□□□□ -0.47
RNF4-213ENST00000509388 NUP50Q9UKX7 468 aa12.14□□□□□ -0.47
RNF4-213ENST00000509388 ARHGAP32A7KAX9 2087 aa12.14□□□□□ -0.47
RNF4-213ENST00000509388 IGHV3-43A0A0B4J1X8 118 aa12.13□□□□□ -0.47
RNF4-213ENST00000509388 IGHV1-69DA0A0B4J2H0 117 aa12.13□□□□□ -0.47
RNF4-213ENST00000509388 CENPVL3A0A0U1RRI6 287 aa12.13□□□□□ -0.47
RNF4-213ENST00000509388 A0A1W2PRD5 423 aa12.13□□□□□ -0.47
RNF4-213ENST00000509388 A0A1W2PRF3 423 aa12.13□□□□□ -0.47
RNF4-213ENST00000509388 A0A1W2PRM7 423 aa12.13□□□□□ -0.47
RNF4-213ENST00000509388 FAM172BPA6NC97 362 aa12.13□□□□□ -0.47
RNF4-213ENST00000509388 MEIS3P1A6NDR6 274 aa12.13□□□□□ -0.47
RNF4-213ENST00000509388 F2RL2O00254 374 aa12.13□□□□□ -0.47
RNF4-213ENST00000509388 SULT1C2O00338 296 aa12.13□□□□□ -0.47
RNF4-213ENST00000509388 FABP7O15540 132 aa12.13□□□□□ -0.47
RNF4-213ENST00000509388 HSPA12AO43301 675 aa12.13□□□□□ -0.47
RNF4-213ENST00000509388 SSX5O60225 188 aa12.13□□□□□ -0.47
RNF4-213ENST00000509388 RGS11O94810 467 aa12.13□□□□□ -0.47
RNF4-213ENST00000509388 IGHV1-69P01742 117 aa12.13□□□□□ -0.47
RNF4-213ENST00000509388 LPLP06858 475 aa12.13□□□□□ -0.47
RNF4-213ENST00000509388 IGHV3-43DP0DP04 118 aa12.13□□□□□ -0.47
RNF4-213ENST00000509388 IGHV4-38-2P0DP08 117 aa12.13□□□□□ -0.47
RNF4-213ENST00000509388 HOXB4P17483 251 aaPredicted RBP12.13□□□□□ -0.47
RNF4-213ENST00000509388 UBE2E1P51965 193 aa12.13□□□□□ -0.47
RNF4-213ENST00000509388 PRRX1P54821 245 aa12.13□□□□□ -0.47
RNF4-213ENST00000509388 BPIFB3P59826 476 aa12.13□□□□□ -0.47
RNF4-213ENST00000509388 KLRD1Q13241 179 aa12.13□□□□□ -0.47
RNF4-213ENST00000509388 SPANXN2Q5MJ10 180 aa12.13□□□□□ -0.47
RNF4-213ENST00000509388 STEAP3Q658P3 488 aa12.13□□□□□ -0.47
RNF4-213ENST00000509388 OR52M1Q8NGK5 317 aa12.13□□□□□ -0.47
RNF4-213ENST00000509388 OR6Q1Q8NGQ2 317 aa12.13□□□□□ -0.47
RNF4-213ENST00000509388 TNFRSF14Q92956 283 aa12.13□□□□□ -0.47
RNF4-213ENST00000509388 OCSTAMPQ9BR26 566 aa12.13□□□□□ -0.47
RNF4-213ENST00000509388 DOCK11Q5JSL3 2073 aa12.13□□□□□ -0.47
RNF4-213ENST00000509388 ABCA2Q9BZC7 2435 aa12.12□□□□□ -0.47
RNF4-213ENST00000509388 YLPM1P49750 1951 aaKnown RBP12.12□□□□□ -0.47
RNF4-213ENST00000509388 HIVEP1P15822 2718 aa12.12□□□□□ -0.47
RNF4-213ENST00000509388 IGHV2-26A0A0B4J1V2 119 aa12.12□□□□□ -0.47
RNF4-213ENST00000509388 RNASEK-C17orf49H0YIS7 233 aa12.12□□□□□ -0.47
RNF4-213ENST00000509388 ARG1P05089 322 aa12.12□□□□□ -0.47
RNF4-213ENST00000509388 SCTP09683 121 aa12.12□□□□□ -0.47
RNF4-213ENST00000509388 GSTT2P0CG29 244 aa12.12□□□□□ -0.47
RNF4-213ENST00000509388 GSTT2BP0CG30 244 aa12.12□□□□□ -0.47
RNF4-213ENST00000509388 SRD5A1P18405 259 aa12.12□□□□□ -0.47
RNF4-213ENST00000509388 ZBTB25P24278 435 aa12.12□□□□□ -0.47
RNF4-213ENST00000509388 GDNFP39905 211 aa12.12□□□□□ -0.47
RNF4-213ENST00000509388 ARPC4P59998 168 aa12.12□□□□□ -0.47
RNF4-213ENST00000509388 MRPS10P82664 201 aaKnown RBP12.12□□□□□ -0.47
RNF4-213ENST00000509388 HTD2P86397 168 aa12.12□□□□□ -0.47
RNF4-213ENST00000509388 HOGA1Q86XE5 327 aa12.12□□□□□ -0.47
RNF4-213ENST00000509388 BEST4Q8NFU0 473 aa12.12□□□□□ -0.47
RNF4-213ENST00000509388 OR10V1Q8NGI7 309 aa12.12□□□□□ -0.47
RNF4-213ENST00000509388 OR4A4PQ8NGN8 299 aa12.12□□□□□ -0.47
RNF4-213ENST00000509388 OR9G1Q8NH87 305 aa12.12□□□□□ -0.47
RNF4-213ENST00000509388 ZNF596Q8TC21 504 aa12.12□□□□□ -0.47
RNF4-213ENST00000509388 FCAMRQ8WWV6 532 aa12.12□□□□□ -0.47
RNF4-213ENST00000509388 GCDHQ92947 438 aaPredicted RBP12.12□□□□□ -0.47
RNF4-213ENST00000509388 ABHD1Q96SE0 405 aa12.12□□□□□ -0.47
RNF4-213ENST00000509388 GFOD1Q9NXC2 390 aa12.12□□□□□ -0.47
RNF4-213ENST00000509388 PTTG2Q9NZH5 202 aa12.12□□□□□ -0.47
RNF4-213ENST00000509388 JPT1Q9UK76 154 aa12.12□□□□□ -0.47
RNF4-213ENST00000509388 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.12□□□□□ -0.472e-7■■■■■ 29.5
RNF4-213ENST00000509388 F8P00451 2351 aa12.11□□□□□ -0.47
RNF4-213ENST00000509388 MEIOCA2RUB1 952 aa12.11□□□□□ -0.47
RNF4-213ENST00000509388 BET1O15155 118 aa12.11□□□□□ -0.47
RNF4-213ENST00000509388 RBBP9O75884 186 aa12.11□□□□□ -0.47
RNF4-213ENST00000509388 IGHV3-7P01780 117 aa12.11□□□□□ -0.47
RNF4-213ENST00000509388 FCER2P06734 321 aa12.11□□□□□ -0.47
RNF4-213ENST00000509388 CTXN2P0C2S0 81 aa12.11□□□□□ -0.47
RNF4-213ENST00000509388 RNASE12Q5GAN4 147 aaKnown RBP12.11□□□□□ -0.47
RNF4-213ENST00000509388 KLF17Q5JT82 389 aaPredicted RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms