RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 ZFAND2BQ8WV99 257 aa8.21□□□□□ -1.1
NUP54-203ENST00000504173 LHX4Q969G2 390 aa8.21□□□□□ -1.1
NUP54-203ENST00000504173 ARL11Q969Q4 196 aa8.21□□□□□ -1.1
NUP54-203ENST00000504173 UPRTQ96BW1 309 aa8.21□□□□□ -1.1
NUP54-203ENST00000504173 KRTAP17-1Q9BYP8 105 aa8.21□□□□□ -1.1
NUP54-203ENST00000504173 RAB9BQ9NP90 201 aa8.21□□□□□ -1.1
NUP54-203ENST00000504173 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.21□□□□□ -1.1
NUP54-203ENST00000504173 BATF3Q9NR55 127 aa8.21□□□□□ -1.1
NUP54-203ENST00000504173 KCNIP1Q9NZI2 227 aa8.21□□□□□ -1.1
NUP54-203ENST00000504173 IGHV3OR16-10A0A075B7F0 116 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 TRBV6-6A0A0A6YYG2 114 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 C12orf77C9JDV5 145 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 CTDSP2O14595 271 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 SPINT2O43291 252 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 TCF21O43680 179 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 ORC5O43913 435 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 IGHV1-8P0DP01 117 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 RCC1P18754 421 aaPredicted RBP8.2□□□□□ -1.1
NUP54-203ENST00000504173 OMGP23515 440 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 COX7A1P24310 79 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 TAS2R20P59543 309 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 PITPNAQ00169 270 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 PRB3Q04118 309 aaPredicted RBP8.2□□□□□ -1.1
NUP54-203ENST00000504173 KLRD1Q13241 179 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 LTC4SQ16873 150 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 PNLIPRP3Q17RR3 467 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 GPR157Q5UAW9 335 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 HACD4Q5VWC8 232 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 HEPN1Q6WQI6 88 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 PDZD9Q8IXQ8 264 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 PRR18Q8N4B5 295 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 C11orf42Q8N5U0 333 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 C3orf56Q8N813 242 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 RFESDQ8TAC1 157 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 UBALD1Q8TB05 177 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 NUDCD2Q8WVJ2 157 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 NXF2Q9GZY0 626 aaKnown RBP8.2□□□□□ -1.1
NUP54-203ENST00000504173 MIXL1Q9H2W2 232 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 AUNIPQ9H7T9 357 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 HEXA-AS1Q9H8Q6 139 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 UNKLQ9H9P5 680 aaKnown RBP8.2□□□□□ -1.1
NUP54-203ENST00000504173 TAF9BQ9HBM6 251 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 MBNL3Q9NUK0 354 aaKnown RBP8.2□□□□□ -1.1
NUP54-203ENST00000504173 IDI2-AS1Q9NZ38 188 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 EXTL2Q9UBQ6 330 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 ELF5Q9UKW6 265 aaPredicted RBP8.2□□□□□ -1.1
NUP54-203ENST00000504173 MGAT4AQ9UM21 535 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 SESN1Q9Y6P5 492 aa8.2□□□□□ -1.1
NUP54-203ENST00000504173 POM121CA8CG34 1229 aa8.19□□□□□ -1.1
NUP54-203ENST00000504173 NPIPB11E5RHQ5 1161 aa8.19□□□□□ -1.1
NUP54-203ENST00000504173 C15orf65H3BRN8 121 aa8.19□□□□□ -1.1
NUP54-203ENST00000504173 MMP23AO75900 390 aa8.19□□□□□ -1.1
NUP54-203ENST00000504173 HBZP02008 142 aa8.19□□□□□ -1.1
NUP54-203ENST00000504173 FCGR3AP08637 254 aa8.19□□□□□ -1.1
NUP54-203ENST00000504173 CGB3P0DN86 165 aa8.19□□□□□ -1.1
NUP54-203ENST00000504173 CGB7P0DN87 165 aa8.19□□□□□ -1.1
NUP54-203ENST00000504173 IGHV4-38-2P0DP08 117 aa8.19□□□□□ -1.1
NUP54-203ENST00000504173 DTYMKP23919 212 aa8.19□□□□□ -1.1
NUP54-203ENST00000504173 NFYBP25208 207 aa8.19□□□□□ -1.1
NUP54-203ENST00000504173 GDNFP39905 211 aa8.19□□□□□ -1.1
NUP54-203ENST00000504173 GUCA2AQ02747 115 aa8.19□□□□□ -1.1
NUP54-203ENST00000504173 MADCAM1Q13477 382 aa8.19□□□□□ -1.1
NUP54-203ENST00000504173 HMGN3Q15651 99 aa8.19□□□□□ -1.1
NUP54-203ENST00000504173 OR52W1Q6IF63 320 aa8.19□□□□□ -1.1
NUP54-203ENST00000504173 ZNF880Q6PDB4 577 aa8.19□□□□□ -1.1
NUP54-203ENST00000504173 CNIH2Q6PI25 160 aa8.19□□□□□ -1.1
NUP54-203ENST00000504173 Q6ZPA2 131 aa8.19□□□□□ -1.1
NUP54-203ENST00000504173 ZNF554Q86TJ5 538 aa8.19□□□□□ -1.1
NUP54-203ENST00000504173 OR13D1Q8NGV5 346 aa8.19□□□□□ -1.1
NUP54-203ENST00000504173 TNFRSF14Q92956 283 aa8.19□□□□□ -1.1
NUP54-203ENST00000504173 SUCNR1Q9BXA5 334 aa8.19□□□□□ -1.1
NUP54-203ENST00000504173 MMP27Q9H306 513 aa8.19□□□□□ -1.1
NUP54-203ENST00000504173 LINC00574Q9H8X3 128 aa8.19□□□□□ -1.1
NUP54-203ENST00000504173 Q9N2K0 584 aa8.19□□□□□ -1.1
NUP54-203ENST00000504173 MRPS7Q9Y2R9 242 aaKnown RBP8.19□□□□□ -1.1
NUP54-203ENST00000504173 A3GALT2U3KPV4 340 aa8.19□□□□□ -1.1
NUP54-203ENST00000504173 IGHV1-69DA0A0B4J2H0 117 aa8.18□□□□□ -1.1
NUP54-203ENST00000504173 CENPVL3A0A0U1RRI6 287 aa8.18□□□□□ -1.1
NUP54-203ENST00000504173 A0A1W2PRD5 423 aa8.18□□□□□ -1.1
NUP54-203ENST00000504173 A0A1W2PRF3 423 aa8.18□□□□□ -1.1
NUP54-203ENST00000504173 A0A1W2PRM7 423 aa8.18□□□□□ -1.1
NUP54-203ENST00000504173 FAM172BPA6NC97 362 aa8.18□□□□□ -1.1
NUP54-203ENST00000504173 RNASEK-C17orf49H0YIS7 233 aa8.18□□□□□ -1.1
NUP54-203ENST00000504173 SDCBPO00560 298 aaPredicted RBP8.18□□□□□ -1.1
NUP54-203ENST00000504173 FSHBP01225 129 aa8.18□□□□□ -1.1
NUP54-203ENST00000504173 IGHV1-69P01742 117 aa8.18□□□□□ -1.1
NUP54-203ENST00000504173 MELTFP08582 738 aa8.18□□□□□ -1.1
NUP54-203ENST00000504173 PTHLHP12272 177 aa8.18□□□□□ -1.1
NUP54-203ENST00000504173 FPR2P25090 351 aa8.18□□□□□ -1.1
NUP54-203ENST00000504173 S100A5P33763 92 aa8.18□□□□□ -1.1
NUP54-203ENST00000504173 HLA-DRB3P79483 266 aa8.18□□□□□ -1.1
NUP54-203ENST00000504173 KLF17Q5JT82 389 aaPredicted RBP8.18□□□□□ -1.1
NUP54-203ENST00000504173 BAIAP2L2Q6UXY1 529 aa8.18□□□□□ -1.1
NUP54-203ENST00000504173 SNX29P2Q8IUI4 249 aa8.18□□□□□ -1.1
NUP54-203ENST00000504173 PNKDQ8N490 385 aa8.18□□□□□ -1.1
NUP54-203ENST00000504173 OR10A7Q8NGE5 316 aa8.18□□□□□ -1.1
NUP54-203ENST00000504173 OR1L1Q8NH94 360 aa8.18□□□□□ -1.1
NUP54-203ENST00000504173 MAFIPQ8WZ33 124 aa8.18□□□□□ -1.1
NUP54-203ENST00000504173 DIRAS2Q96HU8 199 aa8.18□□□□□ -1.1
NUP54-203ENST00000504173 KIRREL1Q96J84 757 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms