RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 PLXDC1Q8IUK5 500 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 OR2AE1Q8NHA4 323 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 OR1F12Q8NHA8 337 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 THAP3Q8WTV1 239 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-230ENST00000495090 EXTL1Q92935 676 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 GPR146Q96CH1 333 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 PCGF1Q9BSM1 259 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 STRADBQ9C0K7 418 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 WDR61Q9GZS3 305 aaKnown RBP8.29□□□□□ -1.08
SYNE1-230ENST00000495090 FUT9Q9Y231 359 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 POLR3KQ9Y2Y1 108 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-230ENST00000495090 TDRD6O60522 2096 aaKnown RBP8.29□□□□□ -1.08
SYNE1-230ENST00000495090 IGKV1D-13A0A0B4J2D9 117 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 OR6C6A6NF89 314 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 NPIPA2E9PIF3 369 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 NPIPA3F8WFD2 350 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 OR7C1O76099 320 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-230ENST00000495090 RPLP1P05386 114 aaKnown RBP8.29□□□□□ -1.08
SYNE1-230ENST00000495090 IGKV1-13P0DP09 117 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 ZNF25P17030 456 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-230ENST00000495090 TUBG1P23258 451 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 PSMB3P49720 205 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 DLX2Q07687 328 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-230ENST00000495090 TMEM267Q0VDI3 215 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-230ENST00000495090 CDCP2Q5VXM1 449 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 SAXO1Q8IYX7 474 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 C17orf78Q8N4C9 275 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 OR10G3Q8NGC4 313 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 RBM24Q9BX46 236 aaKnown RBP8.29□□□□□ -1.08
SYNE1-230ENST00000495090 ULBP2Q9BZM5 246 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 PARLQ9H300 379 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 CBLN4Q9NTU7 201 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 NAGKQ9UJ70 344 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 GOLT1BQ9Y3E0 138 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 ATP23Q9Y6H3 246 aa8.29□□□□□ -1.08
SYNE1-230ENST00000495090 C5orf42Q9H799 3197 aa8.28□□□□□ -1.08
SYNE1-230ENST00000495090 A0A0G2JRQ6 117 aa8.28□□□□□ -1.08
SYNE1-230ENST00000495090 ZNF816-ZNF321PA0A0X1KG74 233 aa8.28□□□□□ -1.08
SYNE1-230ENST00000495090 A0A1W2PPQ1 181 aa8.28□□□□□ -1.08
SYNE1-230ENST00000495090 LRRC3CA6NJW4 275 aa8.28□□□□□ -1.08
SYNE1-230ENST00000495090 LMO7DNF2Z398 122 aa8.28□□□□□ -1.08
SYNE1-230ENST00000495090 SYNGR2O43760 224 aa8.28□□□□□ -1.08
SYNE1-230ENST00000495090 ZFAND5O76080 213 aa8.28□□□□□ -1.08
SYNE1-230ENST00000495090 DKK1O94907 266 aa8.28□□□□□ -1.08
SYNE1-230ENST00000495090 G0S2P27469 103 aa8.28□□□□□ -1.08
SYNE1-230ENST00000495090 LBX1P52954 281 aa8.28□□□□□ -1.08
SYNE1-230ENST00000495090 UBE2NP61088 152 aaKnown RBP8.28□□□□□ -1.08
SYNE1-230ENST00000495090 HNRNPKP61978 463 aaKnown RBP eCLIP8.28□□□□□ -1.08
SYNE1-230ENST00000495090 RPS18P62269 152 aaKnown RBP8.28□□□□□ -1.08
SYNE1-230ENST00000495090 RAC1P63000 192 aa8.28□□□□□ -1.08
SYNE1-230ENST00000495090 MRPL30Q8TCC3 161 aaKnown RBP8.28□□□□□ -1.08
SYNE1-230ENST00000495090 LHX4Q969G2 390 aa8.28□□□□□ -1.08
SYNE1-230ENST00000495090 ZNF501Q96CX3 271 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-230ENST00000495090 ZNF385AQ96PM9 386 aaKnown RBP8.28□□□□□ -1.08
SYNE1-230ENST00000495090 C20orf144Q9BQM9 153 aa8.28□□□□□ -1.08
SYNE1-230ENST00000495090 TMEM208Q9BTX3 173 aa8.28□□□□□ -1.08
SYNE1-230ENST00000495090 RIMS4Q9H426 269 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-230ENST00000495090 CCL28Q9NRJ3 127 aa8.28□□□□□ -1.08
SYNE1-230ENST00000495090 SLC39A9Q9NUM3 307 aa8.28□□□□□ -1.08
SYNE1-230ENST00000495090 PIAS3Q9Y6X2 628 aa8.28□□□□□ -1.08
SYNE1-230ENST00000495090 F5P12259 2224 aa8.28□□□□□ -1.08
SYNE1-230ENST00000495090 MKI67P46013 3256 aaKnown RBP8.28□□□□□ -1.08
SYNE1-230ENST00000495090 IGHV1OR21-1A0A087WYE8 117 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 TRBV6-6A0A0A6YYG2 114 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 CTXND1A0A1B0GTU2 59 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 CCDC85CA6NKD9 419 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 H3BP45 60 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 TP53I11O14683 189 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 DUX1O43812 170 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 LCATP04180 440 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 SERPINE2P07093 398 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 CA3P07451 260 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 SCTP09683 121 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 RPL15P61313 204 aaKnown RBP8.27□□□□□ -1.09
SYNE1-230ENST00000495090 PLCXD3Q63HM9 321 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 HAPLN4Q86UW8 402 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 ZNF611Q8N823 705 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 NECAP1Q8NC96 275 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 TMEM37Q8WXS4 190 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 TAF15Q92804 592 aaKnown RBP eCLIP8.27□□□□□ -1.09
SYNE1-230ENST00000495090 PLK3Q9H4B4 646 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 PSENENQ9NZ42 101 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 FER1L5A0AVI2 2057 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 RALGAPA1Q6GYQ0 2036 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 FAM90A26D6RGX4 464 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 NXPH3O95157 252 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 SCGB1D1O95968 90 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 GYPAP02724 150 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 OR3A1P47881 315 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 ELLP55199 621 aaPredicted RBP8.27□□□□□ -1.09
SYNE1-230ENST00000495090 FGF12P61328 243 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 RANP62826 216 aaKnown RBP8.27□□□□□ -1.09
SYNE1-230ENST00000495090 GNB2P62879 340 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 ARL16Q0P5N6 197 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 FAM69BQ5VUD6 431 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 ZNF774Q6NX45 483 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 C16orf54Q6UWD8 224 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 SHISA6Q6ZSJ9 500 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 TMEM144Q7Z5S9 345 aa8.27□□□□□ -1.09
SYNE1-230ENST00000495090 RABEPKQ7Z6M1 372 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms