RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 TMEM89A2RUT3 159 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 GPR89AB7ZAQ6 455 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 NDUFS8O00217 210 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 HMGN4O00479 90 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 ARPC3O15145 178 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 MED6O75586 246 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 NDUFB2O95178 105 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 IFNA1P01562 189 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 OPN1MWP04001 364 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 CRHP06850 196 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 KLK1P06870 262 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 OR4Q2P0C623 313 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 PIRTP0C851 137 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 GPR89BP0CG08 455 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 OPN1MW2P0DN77 364 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 OPN1MW3P0DN78 364 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 PTHLHP12272 177 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 CSNK2A2P19784 350 aaPredicted RBP4.15□□□□□ -1.75
USP40-213ENST00000483216 TBXA2RP21731 343 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 DPP4P27487 766 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 TEAD1P28347 426 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 IL2RGP31785 369 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 CD80P33681 288 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 SNCAP37840 140 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 PPICP45877 212 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 IDH3GP51553 393 aaPredicted RBP4.15□□□□□ -1.75
USP40-213ENST00000483216 CEBPGP53567 150 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 OR2B8PP59922 312 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 GLO1Q04760 184 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 DHRS2Q13268 280 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 EIF3IQ13347 325 aaKnown RBP4.15□□□□□ -1.75
USP40-213ENST00000483216 IHHQ14623 411 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 GPNMBQ14956 572 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 ZNHIT3Q15649 155 aaPredicted RBP4.15□□□□□ -1.75
USP40-213ENST00000483216 UBE2V2Q15819 145 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 ACOT6Q3I5F7 207 aaPredicted RBP4.15□□□□□ -1.75
USP40-213ENST00000483216 NKAIN1Q4KMZ8 207 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 CLLU1OSQ5K130 101 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 KHDRBS2Q5VWX1 349 aaKnown RBP4.15□□□□□ -1.75
USP40-213ENST00000483216 OR52W1Q6IF63 320 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 PLBD1Q6P4A8 553 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 SLC16A14Q7RTX9 510 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 ZNF550Q7Z398 422 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 CBLN2Q8IUK8 224 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 GABRG1Q8N1C3 465 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 C10orf111Q8N326 155 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 ZNF433Q8N7K0 673 aaPredicted RBP4.15□□□□□ -1.75
USP40-213ENST00000483216 ACOT4Q8N9L9 421 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 SUMF2Q8NBJ7 301 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 TMEM104Q8NE00 496 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 OR4C16Q8NGL9 310 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 OR10G4Q8NGN3 311 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 OR5M1Q8NGP8 315 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 OR9A1PQ8NGU1 263 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 OR2L8Q8NGY9 312 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 OR51F2Q8NH61 342 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 LYPD6BQ8NI32 183 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 TMEM239Q8WW34 195 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 PGLYRP3Q96LB9 341 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 MCHR1Q99705 422 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 ANGPTL4Q9BY76 406 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 OR52D1Q9H346 318 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 METTL8Q9H825 291 aaKnown RBP4.15□□□□□ -1.75
USP40-213ENST00000483216 ADAP2Q9NPF8 381 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 PRSS16Q9NQE7 514 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 CA10Q9NS85 328 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 C1orf123Q9NWV4 160 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 OR5AC2Q9NZP5 309 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 CACFD1Q9UGQ2 172 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 VAX2Q9UIW0 290 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 RAB22AQ9UL26 194 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 YARS2Q9Y2Z4 477 aaKnown RBP4.15□□□□□ -1.75
USP40-213ENST00000483216 STARD10Q9Y365 291 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 GOLT1BQ9Y3E0 138 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 KIAA0100Q14667 2235 aaKnown RBP4.15□□□□□ -1.75
USP40-213ENST00000483216 VWA8A3KMH1 1905 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 MIA3Q5JRA6 1907 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 IGLV8-61A0A075B6I0 122 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 A0A0U1RRA0 63 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 C7orf77A4D0Y5 90 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 IQCF5A8MTL0 148 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 K7EPK0 472 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 ADAP1O75689 374 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 CD37P11049 281 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 NQO2P16083 231 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 IMPA1P29218 277 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 ACVR1BP36896 505 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 RPS10P46783 165 aaKnown RBP4.14□□□□□ -1.75
USP40-213ENST00000483216 SULT1A1P50225 295 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 TAS2R46P59540 309 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 STXBP1P61764 594 aaKnown RBP4.14□□□□□ -1.75
USP40-213ENST00000483216 JOSD1Q15040 202 aaPredicted RBP4.14□□□□□ -1.75
USP40-213ENST00000483216 TMEM241Q24JQ0 296 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 TMEM176BQ3YBM2 270 aaPredicted RBP4.14□□□□□ -1.75
USP40-213ENST00000483216 TRMT12Q53H54 448 aaKnown RBP4.14□□□□□ -1.75
USP40-213ENST00000483216 CLEC12AQ5QGZ9 265 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 FAM74A1Q5RGS3 127 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 C9orf64Q5T6V5 341 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 SDHAF4Q5VUM1 108 aa4.14□□□□□ -1.75
USP40-213ENST00000483216 TNFAIP8L2Q6P589 184 aaPredicted RBP4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms