RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 SRRQ9GZT4 340 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 C7orf69Q9H7B7 122 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 LINC00574Q9H8X3 128 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 RAB9BQ9NP90 201 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 IDI2-AS1Q9NZ38 188 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 KPTNQ9Y664 436 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 IGKV1D-8A0A087WSZ0 117 aa10.04□□□□□ -0.8
SDC1-206ENST00000482879 NPIPB11E5RHQ5 1161 aa10.04□□□□□ -0.8
SDC1-206ENST00000482879 FABP7O15540 132 aa10.04□□□□□ -0.8
SDC1-206ENST00000482879 GSTZ1O43708 216 aaPredicted RBP10.04□□□□□ -0.8
SDC1-206ENST00000482879 CD5LO43866 347 aa10.04□□□□□ -0.8
SDC1-206ENST00000482879 MMP23AO75900 390 aa10.04□□□□□ -0.8
SDC1-206ENST00000482879 TOX4O94842 621 aa10.04□□□□□ -0.8
SDC1-206ENST00000482879 GSTT2P0CG29 244 aa10.04□□□□□ -0.8
SDC1-206ENST00000482879 GSTT2BP0CG30 244 aa10.04□□□□□ -0.8
SDC1-206ENST00000482879 FOSL1P15407 271 aa10.04□□□□□ -0.8
SDC1-206ENST00000482879 LSAMPQ13449 338 aa10.04□□□□□ -0.8
SDC1-206ENST00000482879 HEPN1Q6WQI6 88 aa10.04□□□□□ -0.8
SDC1-206ENST00000482879 Q8N402 240 aa10.04□□□□□ -0.8
SDC1-206ENST00000482879 GDPD1Q8N9F7 314 aa10.04□□□□□ -0.8
SDC1-206ENST00000482879 IL1F10Q8WWZ1 152 aa10.04□□□□□ -0.8
SDC1-206ENST00000482879 GALMQ96C23 342 aa10.04□□□□□ -0.8
SDC1-206ENST00000482879 PCGF1Q9BSM1 259 aa10.04□□□□□ -0.8
SDC1-206ENST00000482879 SIRPDQ9H106 197 aa10.04□□□□□ -0.8
SDC1-206ENST00000482879 METTL8Q9H825 291 aaKnown RBP10.04□□□□□ -0.8
SDC1-206ENST00000482879 KLK11Q9UBX7 282 aa10.04□□□□□ -0.8
SDC1-206ENST00000482879 MTFP1Q9UDX5 166 aa10.04□□□□□ -0.8
SDC1-206ENST00000482879 ANAPC10Q9UM13 185 aa10.04□□□□□ -0.8
SDC1-206ENST00000482879 AUP1Q9Y679 476 aa10.04□□□□□ -0.8
SDC1-206ENST00000482879 ZNF469Q96JG9 3925 aaPredicted RBP10.03□□□□□ -0.8
SDC1-206ENST00000482879 J3QLI3 93 aa10.03□□□□□ -0.8
SDC1-206ENST00000482879 F2RL2O00254 374 aa10.03□□□□□ -0.8
SDC1-206ENST00000482879 SDCBPO00560 298 aaPredicted RBP10.03□□□□□ -0.8
SDC1-206ENST00000482879 RBP4P02753 201 aa10.03□□□□□ -0.8
SDC1-206ENST00000482879 IGHV1-8P0DP01 117 aa10.03□□□□□ -0.8
SDC1-206ENST00000482879 MMP9P14780 707 aa10.03□□□□□ -0.8
SDC1-206ENST00000482879 NAT1P18440 290 aa10.03□□□□□ -0.8
SDC1-206ENST00000482879 PRTN3P24158 256 aa10.03□□□□□ -0.8
SDC1-206ENST00000482879 FPR2P25090 351 aa10.03□□□□□ -0.8
SDC1-206ENST00000482879 NFYBP25208 207 aa10.03□□□□□ -0.8
SDC1-206ENST00000482879 RCVRNP35243 200 aa10.03□□□□□ -0.8
SDC1-206ENST00000482879 GDNFP39905 211 aa10.03□□□□□ -0.8
SDC1-206ENST00000482879 ACTBP60709 375 aa10.03□□□□□ -0.8
SDC1-206ENST00000482879 ACTG1P63261 375 aa10.03□□□□□ -0.8
SDC1-206ENST00000482879 KRTAP1-1Q07627 177 aa10.03□□□□□ -0.8
SDC1-206ENST00000482879 ZNF846Q147U1 533 aa10.03□□□□□ -0.8
SDC1-206ENST00000482879 CHRFAM7AQ494W8 412 aa10.03□□□□□ -0.8
SDC1-206ENST00000482879 OR52W1Q6IF63 320 aa10.03□□□□□ -0.8
SDC1-206ENST00000482879 ZNF782Q6ZMW2 699 aaPredicted RBP10.03□□□□□ -0.8
SDC1-206ENST00000482879 VMO1Q7Z5L0 202 aa10.03□□□□□ -0.8
SDC1-206ENST00000482879 OR10A7Q8NGE5 316 aa10.03□□□□□ -0.8
SDC1-206ENST00000482879 OR4A4PQ8NGN8 299 aa10.03□□□□□ -0.8
SDC1-206ENST00000482879 SNAPC3Q92966 411 aa10.03□□□□□ -0.8
SDC1-206ENST00000482879 KIRREL1Q96J84 757 aa10.03□□□□□ -0.8
SDC1-206ENST00000482879 THAP7Q9BT49 309 aaPredicted RBP10.03□□□□□ -0.8
SDC1-206ENST00000482879 SUCNR1Q9BXA5 334 aa10.03□□□□□ -0.8
SDC1-206ENST00000482879 TMPRSS13Q9BYE2 586 aa10.03□□□□□ -0.8
SDC1-206ENST00000482879 SIRT7Q9NRC8 400 aa10.03□□□□□ -0.8
SDC1-206ENST00000482879 ANXA10Q9UJ72 324 aa10.03□□□□□ -0.8
SDC1-206ENST00000482879 KCNS2Q9ULS6 477 aa10.03□□□□□ -0.8
SDC1-206ENST00000482879 SESN1Q9Y6P5 492 aa10.03□□□□□ -0.8
SDC1-206ENST00000482879 F8P00451 2351 aa10.03□□□□□ -0.8
SDC1-206ENST00000482879 SONP18583 2426 aaKnown RBP10.02□□□□□ -0.81
SDC1-206ENST00000482879 IGHV3-43A0A0B4J1X8 118 aa10.02□□□□□ -0.81
SDC1-206ENST00000482879 IGKV1-6A0A0C4DH72 117 aa10.02□□□□□ -0.81
SDC1-206ENST00000482879 HSPA12AO43301 675 aa10.02□□□□□ -0.81
SDC1-206ENST00000482879 LANCL1O43813 399 aa10.02□□□□□ -0.81
SDC1-206ENST00000482879 IGHV3-43DP0DP04 118 aa10.02□□□□□ -0.81
SDC1-206ENST00000482879 HLA-DMAP28067 261 aa10.02□□□□□ -0.81
SDC1-206ENST00000482879 DLX1P56177 255 aa10.02□□□□□ -0.81
SDC1-206ENST00000482879 ARPC4P59998 168 aa10.02□□□□□ -0.81
SDC1-206ENST00000482879 HTD2P86397 168 aa10.02□□□□□ -0.81
SDC1-206ENST00000482879 PRB3Q04118 309 aaPredicted RBP10.02□□□□□ -0.81
SDC1-206ENST00000482879 SSBP1Q04837 148 aaKnown RBP10.02□□□□□ -0.81
SDC1-206ENST00000482879 IGSF11Q5DX21 431 aa10.02□□□□□ -0.81
SDC1-206ENST00000482879 LYSMD2Q8IV50 215 aa10.02□□□□□ -0.81
SDC1-206ENST00000482879 OR52L2PQ8NGH6 319 aa10.02□□□□□ -0.81
SDC1-206ENST00000482879 OR52M1Q8NGK5 317 aa10.02□□□□□ -0.81
SDC1-206ENST00000482879 TBX15Q96SF7 602 aa10.02□□□□□ -0.81
SDC1-206ENST00000482879 SDHCQ99643 169 aaPredicted RBP10.02□□□□□ -0.81
SDC1-206ENST00000482879 SMR3AQ99954 134 aa10.02□□□□□ -0.81
SDC1-206ENST00000482879 WDR12Q9GZL7 423 aaKnown RBP10.02□□□□□ -0.81
SDC1-206ENST00000482879 HEXA-AS1Q9H8Q6 139 aa10.02□□□□□ -0.81
SDC1-206ENST00000482879 OR2S2Q9NQN1 319 aa10.02□□□□□ -0.81
SDC1-206ENST00000482879 YAE1D1Q9NRH1 226 aa10.02□□□□□ -0.81
SDC1-206ENST00000482879 GFOD1Q9NXC2 390 aa10.02□□□□□ -0.81
SDC1-206ENST00000482879 GNG12Q9UBI6 72 aa10.02□□□□□ -0.81
SDC1-206ENST00000482879 RBMX2Q9Y388 322 aaKnown RBP10.02□□□□□ -0.81
SDC1-206ENST00000482879 HIVEP1P15822 2718 aa10.02□□□□□ -0.81
SDC1-206ENST00000482879 FAM172BPA6NC97 362 aa10.01□□□□□ -0.81
SDC1-206ENST00000482879 ZNF736B4DX44 427 aaPredicted RBP10.01□□□□□ -0.81
SDC1-206ENST00000482879 BET1O15155 118 aa10.01□□□□□ -0.81
SDC1-206ENST00000482879 LY6G6DO95868 133 aa10.01□□□□□ -0.81
SDC1-206ENST00000482879 AVPP01185 164 aa10.01□□□□□ -0.81
SDC1-206ENST00000482879 PMP2P02689 132 aa10.01□□□□□ -0.81
SDC1-206ENST00000482879 CTXN2P0C2S0 81 aa10.01□□□□□ -0.81
SDC1-206ENST00000482879 OR3A3P47888 321 aa10.01□□□□□ -0.81
SDC1-206ENST00000482879 PPP5CP53041 499 aa10.01□□□□□ -0.81
SDC1-206ENST00000482879 LOXL3P58215 753 aa10.01□□□□□ -0.81
SDC1-206ENST00000482879 TAS2R46P59540 309 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms