RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 TOMM40LQ969M1 308 aa10.68□□□□□ -0.7
VPS13D-205ENST00000473099 CCL13Q99616 98 aa10.68□□□□□ -0.7
VPS13D-205ENST00000473099 SEC22CQ9BRL7 303 aa10.68□□□□□ -0.7
VPS13D-205ENST00000473099 RSRP1Q9BUV0 290 aa10.68□□□□□ -0.7
VPS13D-205ENST00000473099 DCAF16Q9NXF7 216 aa10.68□□□□□ -0.7
VPS13D-205ENST00000473099 LAMP3Q9UQV4 416 aa10.68□□□□□ -0.7
VPS13D-205ENST00000473099 OR2W1Q9Y3N9 320 aa10.68□□□□□ -0.7
VPS13D-205ENST00000473099 SPTAN1Q13813 2472 aaKnown RBP10.68□□□□□ -0.7
VPS13D-205ENST00000473099 USP9YO00507 2555 aaPredicted RBP10.67□□□□□ -0.7
VPS13D-205ENST00000473099 TRGV10A0A0A0MS01 117 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 A0A0B4J2A0 478 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 IGKV1-6A0A0C4DH72 117 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 A0A1W2PPR1 153 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 C9orf170A2RU37 121 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 C12orf77C9JDV5 145 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 TNFRSF13BO14836 293 aaPredicted RBP10.67□□□□□ -0.7
VPS13D-205ENST00000473099 GPR37O15354 613 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 ADAM20O43506 726 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 RP2O75695 350 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 ZNF205O95201 554 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 DUS4LO95620 317 aaKnown RBP10.67□□□□□ -0.7
VPS13D-205ENST00000473099 HBZP02008 142 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 HEXAP06865 529 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 SULT1A3P0DMM9 295 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 SULT1A4P0DMN0 295 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 ANXA3P12429 323 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 COX6B1P14854 86 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 AKR1C4P17516 323 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 NFYAP23511 347 aaPredicted RBP10.67□□□□□ -0.7
VPS13D-205ENST00000473099 FXYD4P59646 89 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 SRSF1Q07955 248 aaKnown RBP eCLIP10.67□□□□□ -0.7
VPS13D-205ENST00000473099 SGPP2Q8IWX5 399 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 C12orf45Q8N5I9 185 aaPredicted RBP10.67□□□□□ -0.7
VPS13D-205ENST00000473099 MRGPRDQ8TDS7 321 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 CAPSLQ8WWF8 208 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 IL1F10Q8WWZ1 152 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 CORO2AQ92828 525 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 ARL11Q969Q4 196 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 PHB2Q99623 299 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 TMEM246Q9BRR3 403 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 RTBDNQ9BSG5 229 aaPredicted RBP10.67□□□□□ -0.7
VPS13D-205ENST00000473099 LIME1Q9H400 295 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 CHODLQ9H9P2 273 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 SLC25A10Q9UBX3 287 aaPredicted RBP10.67□□□□□ -0.7
VPS13D-205ENST00000473099 SHPKQ9UHJ6 478 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 ZNF221Q9UK13 617 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 KCNIP3Q9Y2W7 256 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 UBE2J1Q9Y385 318 aaPredicted RBP10.67□□□□□ -0.7
VPS13D-205ENST00000473099 USF3Q68DE3 2245 aa10.67□□□□□ -0.7
VPS13D-205ENST00000473099 HRNRQ86YZ3 2850 aaPredicted RBP10.67□□□□□ -0.7
VPS13D-205ENST00000473099 PIGBOS1A0A0B4J2F0 54 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 hADV38S2A0JD32 116 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 CLEC18AA5D8T8 446 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 ZNF729A6NN14 1252 aaPredicted RBP10.66□□□□□ -0.7
VPS13D-205ENST00000473099 CYSRT1A8MQ03 144 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 SLC22A5O76082 557 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 RGS11O94810 467 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 SFT2D2O95562 160 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 IGHV2-70P01814 119 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 TFF1P04155 84 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 RNF224P0DH78 156 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 DAOP14920 347 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 VAMP1P23763 118 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 COL8A2P25067 703 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 LUMP51884 338 aaPredicted RBP10.66□□□□□ -0.7
VPS13D-205ENST00000473099 EFNA4P52798 201 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 TMEM33P57088 247 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 RND3P61587 244 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 BAMBIQ13145 260 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 PPP1R1AQ13522 171 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 FCN2Q15485 313 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 MSMO1Q15800 293 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 TMEM155Q4W5P6 130 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 CLEC18BQ6UXF7 455 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 CMTM1Q8IZ96 169 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 TCTE3Q8IZS6 198 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 PRR18Q8N4B5 295 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 FAM216BQ8N7L0 139 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 CLEC18CQ8NCF0 446 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 ADAD2Q8NCV1 583 aaKnown RBP10.66□□□□□ -0.7
VPS13D-205ENST00000473099 OR13A1Q8NGR1 328 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 MITD1Q8WV92 249 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 EDARADDQ8WWZ3 215 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 TMPRSS13Q9BYE2 586 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 SLC5A7Q9GZV3 580 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 TAS2R3Q9NYW6 316 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 MIOXQ9UGB7 285 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 JPT1Q9UK76 154 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 LINC00312Q9Y6C7 94 aa10.66□□□□□ -0.7
VPS13D-205ENST00000473099 TRBV23-1A0A0A0MS06 115 aa10.65□□□□□ -0.7
VPS13D-205ENST00000473099 TEX13DA0A0J9YY54 714 aaPredicted RBP10.65□□□□□ -0.7
VPS13D-205ENST00000473099 CRYM-AS1A6NIL9 109 aa10.65□□□□□ -0.7
VPS13D-205ENST00000473099 C15orf65H3BRN8 121 aa10.65□□□□□ -0.7
VPS13D-205ENST00000473099 F2RL2O00254 374 aa10.65□□□□□ -0.7
VPS13D-205ENST00000473099 GPR31O00270 319 aa10.65□□□□□ -0.7
VPS13D-205ENST00000473099 B3GALNT1O75752 331 aa10.65□□□□□ -0.7
VPS13D-205ENST00000473099 F12P00748 615 aaPredicted RBP10.65□□□□□ -0.7
VPS13D-205ENST00000473099 NDUFB7P17568 137 aa10.65□□□□□ -0.7
VPS13D-205ENST00000473099 CD34P28906 385 aa10.65□□□□□ -0.7
VPS13D-205ENST00000473099 PIGPP57054 158 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms