RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 OR2T11Q8NH01 316 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 MFSD8Q8NHS3 518 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 TRMT10AQ8TBZ6 339 aaKnown RBP3.3□□□□□ -1.88
HMGB1-207ENST00000468384 DYNLRB2Q8TF09 96 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 GIPC3Q8TF64 312 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 TMEM54Q969K7 222 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 C2orf48Q96LS8 159 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 MS4A4EQ96PG1 132 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 OR2H1Q9GZK4 316 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 IQCGQ9H095 443 aaKnown RBP3.3□□□□□ -1.88
HMGB1-207ENST00000468384 SLC38A1Q9H2H9 487 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 SP140LQ9H930 580 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 ZNF586Q9NXT0 402 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 LINC00588Q9Y4M8 146 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 GMEB1Q9Y692 573 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 TRAV26-1A0A087WT03 109 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 NCBP2LA6PVI3 153 aaKnown RBP3.29□□□□□ -1.88
HMGB1-207ENST00000468384 LEUTXA8MZ59 168 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 CCSO14618 274 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 SH2D1BO14796 132 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 CRYGCP07315 174 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 LYNP07948 512 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 TAC1P20366 129 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 AADACP22760 399 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 CD1BP29016 333 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 TFPI2P48307 235 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 PPT1P50897 306 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 CCL18P55774 89 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 CLDN8P56748 225 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 ERVK-25P63136 954 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 MEF2CQ06413 473 aaPredicted RBP3.29□□□□□ -1.88
HMGB1-207ENST00000468384 FGL1Q08830 312 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 PJVKQ0ZLH3 352 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 ZNF141Q15928 474 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 FAM106AQ4KMX7 169 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 SPANXN2Q5MJ10 180 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 TMEM69Q5SWH9 247 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 AGBL2Q5U5Z8 902 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 C1orf94Q6P1W5 598 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 ZNF773Q6PK81 442 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 Q6ZRG5 221 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 Q6ZVQ6 151 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 C16orf62Q7Z3J2 963 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 SPATA4Q8NEY3 305 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 DMBX1Q8NFW5 382 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 ANGPTL6Q8NI99 470 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 CASTOR1Q8WTX7 329 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 RPL3LQ92901 407 aaKnown RBP3.29□□□□□ -1.88
HMGB1-207ENST00000468384 CHMP6Q96FZ7 201 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 FAM218AQ96MZ4 157 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 CHP1Q99653 195 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 C1QTNF4Q9BXJ3 329 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 ROPN1BQ9BZX4 212 aaPredicted RBP3.29□□□□□ -1.88
HMGB1-207ENST00000468384 TXNIPQ9H3M7 391 aa3.29□□□□□ -1.88
HMGB1-207ENST00000468384 RPL36Q9Y3U8 105 aaKnown RBP3.29□□□□□ -1.88
HMGB1-207ENST00000468384 A0A1B0GW64 132 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 SLC1A7O00341 560 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 AIM2O14862 343 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 EIF3HO15372 352 aaKnown RBP eCLIP3.28□□□□□ -1.88
HMGB1-207ENST00000468384 NPIPB7O75200 414 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 KRTAP5-8O75690 187 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 ZNF189O75820 626 aaPredicted RBP3.28□□□□□ -1.88
HMGB1-207ENST00000468384 AHSA1O95433 338 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 SERPINA1P01009 418 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 RBP4P02753 201 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 ANXA4P09525 319 aaPredicted RBP3.28□□□□□ -1.88
HMGB1-207ENST00000468384 KRTAP1-4P0C5Y4 121 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 UCP1P25874 307 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 FHITP49789 147 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 RWDD2BP57060 319 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 SEC61GP60059 68 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 RPS27AP62979 156 aaKnown RBP3.28□□□□□ -1.88
HMGB1-207ENST00000468384 CSNK2BP67870 215 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 EXOSC2Q13868 293 aaKnown RBP3.28□□□□□ -1.88
HMGB1-207ENST00000468384 TMEM187Q14656 261 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 PRR4Q16378 134 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 TATDN3Q17R31 274 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 SLC22A6Q4U2R8 563 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 DPY19L2P2Q6ZN68 376 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 TRPM8Q7Z2W7 1104 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 GOLGA7Q7Z5G4 137 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 OR56B4Q8NH76 319 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 HAVCR2Q8TDQ0 301 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 GALNT14Q96FL9 552 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 STACQ99469 402 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 CHAC1Q9BUX1 264 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 CLEC7AQ9BXN2 247 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 KRTAP2-1Q9BYU5 128 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 PIGUQ9H490 435 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 SIAEQ9HAT2 523 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 ACOT9Q9Y305 439 aa3.28□□□□□ -1.88
HMGB1-207ENST00000468384 hCG_38984A0A1B0GV85 526 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 TMEM120BA0PK00 339 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 PCP4L1A6NKN8 68 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 KRTAP4-16G5E9R7 235 aaPredicted RBP3.27□□□□□ -1.89
HMGB1-207ENST00000468384 AIREO43918 545 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 UGT2B17O75795 530 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 OR2A4O95047 310 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 ZNF728P0DKX0 622 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 MIFP14174 115 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms