RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 H3F3AP84243 136 aa10.2□□□□□ -0.78
MSH6-204ENST00000445503 EDDM3AQ14507 147 aa10.2□□□□□ -0.78
MSH6-204ENST00000445503 GGACTQ9BVM4 153 aa10.2□□□□□ -0.78
MSH6-204ENST00000445503 GLRX2Q9NS18 164 aa10.2□□□□□ -0.78
MSH6-204ENST00000445503 AURKAIP1Q9NWT8 199 aaPredicted RBP10.2□□□□□ -0.78
MSH6-204ENST00000445503 HNF1AP20823 631 aa10.19□□□□□ -0.78
MSH6-204ENST00000445503 F2RP25116 425 aa10.19□□□□□ -0.78
MSH6-204ENST00000445503 PSMB3P49720 205 aa10.19□□□□□ -0.78
MSH6-204ENST00000445503 UBE2G2P60604 165 aa10.19□□□□□ -0.78
MSH6-204ENST00000445503 HIKESHIQ53FT3 197 aa10.19□□□□□ -0.78
MSH6-204ENST00000445503 NCR3LG1Q68D85 454 aa10.19□□□□□ -0.78
MSH6-204ENST00000445503 LINC00469Q8N7U9 141 aa10.19□□□□□ -0.78
MSH6-204ENST00000445503 RHOVQ96L33 236 aa10.19□□□□□ -0.78
MSH6-204ENST00000445503 WASF3Q9UPY6 502 aa10.19□□□□□ -0.78
MSH6-204ENST00000445503 LOXL2Q9Y4K0 774 aa10.19□□□□□ -0.78
MSH6-204ENST00000445503 K7N7A8 449 aa10.19□□□□□ -0.78
MSH6-204ENST00000445503 GNG3P63215 75 aa10.19□□□□□ -0.78
MSH6-204ENST00000445503 MRPL41Q8IXM3 137 aaKnown RBP10.19□□□□□ -0.78
MSH6-204ENST00000445503 TMEM171Q8WVE6 324 aa10.19□□□□□ -0.78
MSH6-204ENST00000445503 HS3ST6Q96QI5 342 aa10.19□□□□□ -0.78
MSH6-204ENST00000445503 ZNF552Q9H707 407 aaPredicted RBP10.19□□□□□ -0.78
MSH6-204ENST00000445503 WDR54Q9H977 334 aa10.19□□□□□ -0.78
MSH6-204ENST00000445503 Q9N2K0 584 aa10.19□□□□□ -0.78
MSH6-204ENST00000445503 OR1A1Q9P1Q5 309 aa10.19□□□□□ -0.78
MSH6-204ENST00000445503 TCFL5Q9UL49 500 aa10.19□□□□□ -0.78
MSH6-204ENST00000445503 PPP5D1E7EU14 171 aa10.19□□□□□ -0.78
MSH6-204ENST00000445503 PROB1E7EW31 1015 aa10.19□□□□□ -0.78
MSH6-204ENST00000445503 IFNA10P01566 189 aa10.19□□□□□ -0.78
MSH6-204ENST00000445503 CRYGSP22914 178 aa10.19□□□□□ -0.78
MSH6-204ENST00000445503 FOXG1P55316 489 aaPredicted RBP10.19□□□□□ -0.78
MSH6-204ENST00000445503 TAS2R30P59541 319 aa10.19□□□□□ -0.78
MSH6-204ENST00000445503 IMMP1LQ96LU5 166 aa10.19□□□□□ -0.78
MSH6-204ENST00000445503 RAB40CQ96S21 281 aa10.19□□□□□ -0.78
MSH6-204ENST00000445503 IGHV3-13P01766 116 aa10.18□□□□□ -0.78
MSH6-204ENST00000445503 IGHV3-7P01780 117 aa10.18□□□□□ -0.78
MSH6-204ENST00000445503 CD63P08962 238 aa10.18□□□□□ -0.78
MSH6-204ENST00000445503 SRP19P09132 144 aaKnown RBP10.18□□□□□ -0.78
MSH6-204ENST00000445503 OR8U8P0C7N1 319 aa10.18□□□□□ -0.78
MSH6-204ENST00000445503 MAGEA5P43359 124 aa10.18□□□□□ -0.78
MSH6-204ENST00000445503 OR8B8Q15620 311 aa10.18□□□□□ -0.78
MSH6-204ENST00000445503 MSMO1Q15800 293 aa10.18□□□□□ -0.78
MSH6-204ENST00000445503 WDR25Q64LD2 544 aaPredicted RBP10.18□□□□□ -0.78
MSH6-204ENST00000445503 Q8WTZ3 238 aa10.18□□□□□ -0.78
MSH6-204ENST00000445503 RPRMQ9NS64 109 aa10.18□□□□□ -0.78
MSH6-204ENST00000445503 OR2W1Q9Y3N9 320 aa10.18□□□□□ -0.78
MSH6-204ENST00000445503 FREM1Q5H8C1 2179 aa10.18□□□□□ -0.78
MSH6-204ENST00000445503 DOCK10Q96BY6 2186 aa10.18□□□□□ -0.78
MSH6-204ENST00000445503 A0A1W2PPV4 95 aa10.18□□□□□ -0.78
MSH6-204ENST00000445503 DEFB108AA8MXU0 73 aa10.18□□□□□ -0.78
MSH6-204ENST00000445503 ZNF737O75373 536 aa10.18□□□□□ -0.78
MSH6-204ENST00000445503 CELA3AP09093 270 aa10.18□□□□□ -0.78
MSH6-204ENST00000445503 FGF12P61328 243 aa10.18□□□□□ -0.78
MSH6-204ENST00000445503 NANOS1Q8WY41 292 aaKnown RBP10.18□□□□□ -0.78
MSH6-204ENST00000445503 TECTBQ96PL2 329 aa10.18□□□□□ -0.78
MSH6-204ENST00000445503 FOXD3Q9UJU5 478 aaPredicted RBP10.18□□□□□ -0.78
MSH6-204ENST00000445503 ZDHHC8Q9ULC8 765 aa10.18□□□□□ -0.78
MSH6-204ENST00000445503 UBE2CO00762 179 aa10.18□□□□□ -0.78
MSH6-204ENST00000445503 CER1O95813 267 aa10.18□□□□□ -0.78
MSH6-204ENST00000445503 SLC38A11Q08AI6 406 aa10.18□□□□□ -0.78
MSH6-204ENST00000445503 DCAF16Q9NXF7 216 aa10.18□□□□□ -0.78
MSH6-204ENST00000445503 TRANK1O15050 2925 aa10.18□□□□□ -0.78
MSH6-204ENST00000445503 PGA5P0DJD9 388 aa10.18□□□□□ -0.78
MSH6-204ENST00000445503 AGAP20933 346 aa10.18□□□□□ -0.78
MSH6-204ENST00000445503 NTF4P34130 210 aa10.18□□□□□ -0.78
MSH6-204ENST00000445503 UCP3P55916 312 aa10.18□□□□□ -0.78
MSH6-204ENST00000445503 MTCH1Q9NZJ7 389 aa10.18□□□□□ -0.78
MSH6-204ENST00000445503 IGHV3-43A0A0B4J1X8 118 aa10.17□□□□□ -0.78
MSH6-204ENST00000445503 CDIPTO14735 213 aa10.17□□□□□ -0.78
MSH6-204ENST00000445503 IGHV3-43DP0DP04 118 aa10.17□□□□□ -0.78
MSH6-204ENST00000445503 FGF5P12034 268 aa10.17□□□□□ -0.78
MSH6-204ENST00000445503 RPP30P78346 268 aaKnown RBP10.17□□□□□ -0.78
MSH6-204ENST00000445503 BTNL3Q6UXE8 466 aa10.17□□□□□ -0.78
MSH6-204ENST00000445503 ZNF66Q6ZN08 573 aa10.17□□□□□ -0.78
MSH6-204ENST00000445503 GCNT2Q8N0V5 402 aa10.17□□□□□ -0.78
MSH6-204ENST00000445503 OR4D5Q8NGN0 318 aa10.17□□□□□ -0.78
MSH6-204ENST00000445503 DOCK11Q5JSL3 2073 aa10.17□□□□□ -0.78
MSH6-204ENST00000445503 SEC14L6B5MCN3 397 aa10.17□□□□□ -0.78
MSH6-204ENST00000445503 OTX1P32242 354 aaPredicted RBP10.17□□□□□ -0.78
MSH6-204ENST00000445503 FOXO1Q12778 655 aa10.17□□□□□ -0.78
MSH6-204ENST00000445503 GFI1BQ5VTD9 330 aa10.17□□□□□ -0.78
MSH6-204ENST00000445503 CT55Q8WUE5 264 aa10.17□□□□□ -0.78
MSH6-204ENST00000445503 MALSU1Q96EH3 234 aa10.17□□□□□ -0.78
MSH6-204ENST00000445503 RIMS4Q9H426 269 aaPredicted RBP10.17□□□□□ -0.78
MSH6-204ENST00000445503 ZNF705FA8MVS1 300 aaPredicted RBP10.17□□□□□ -0.78
MSH6-204ENST00000445503 IGHEP01854 428 aa10.17□□□□□ -0.78
MSH6-204ENST00000445503 SERPINA7P05543 415 aa10.17□□□□□ -0.78
MSH6-204ENST00000445503 CXCL1P09341 107 aa10.17□□□□□ -0.78
MSH6-204ENST00000445503 ZNF705DP0CH99 300 aaPredicted RBP10.17□□□□□ -0.78
MSH6-204ENST00000445503 ZNF705BP0CI00 300 aaPredicted RBP10.17□□□□□ -0.78
MSH6-204ENST00000445503 SELEP16581 610 aa10.17□□□□□ -0.78
MSH6-204ENST00000445503 FGF7P21781 194 aa10.17□□□□□ -0.78
MSH6-204ENST00000445503 ARR3P36575 388 aa10.17□□□□□ -0.78
MSH6-204ENST00000445503 EIF3IQ13347 325 aaKnown RBP10.17□□□□□ -0.78
MSH6-204ENST00000445503 SPNS3Q6ZMD2 512 aa10.17□□□□□ -0.78
MSH6-204ENST00000445503 TIPARPQ7Z3E1 657 aaKnown RBP10.17□□□□□ -0.78
MSH6-204ENST00000445503 OR13D1Q8NGV5 346 aa10.17□□□□□ -0.78
MSH6-204ENST00000445503 RTL8AQ9BWD3 113 aa10.17□□□□□ -0.78
MSH6-204ENST00000445503 FZR1Q9UM11 496 aa10.17□□□□□ -0.78
MSH6-204ENST00000445503 ATP23Q9Y6H3 246 aa10.17□□□□□ -0.78
MSH6-204ENST00000445503 ARGFXA6NJG6 315 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms