RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 GRB2P62993 217 aaKnown RBP1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 EMX1Q04741 257 aaPredicted RBP1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 PMAIP1Q13794 54 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 PRR30Q53SZ7 412 aaPredicted RBP1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 FAM162BQ5T6X4 162 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 GLT6D1Q7Z4J2 308 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 CROCCP2Q86T23 111 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 ZCCHC24Q8N2G6 241 aaKnown RBP1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 FAM24BQ8N5W8 94 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 ZNF614Q8N883 585 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 C11orf72Q8NBR9 251 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 OR5K1Q8NHB7 308 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 GNPDA2Q8TDQ7 276 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 TBL1XR1Q9BZK7 514 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 HES4Q9HCC6 221 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 CCL28Q9NRJ3 127 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 NUFIP1Q9UHK0 495 aaKnown RBP1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 PYCARDQ9ULZ3 195 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 MYRFQ9Y2G1 1151 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 MOB4Q9Y3A3 225 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 COX11Q9Y6N1 276 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 EFCAB6Q5THR3 1501 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 CD300LBA8K4G0 201 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 PSPHP1O15172 72 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 MED6O75586 246 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 SERPINB7O75635 380 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 CRYZL1O95825 349 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 BGLAPP02818 100 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 PATE4P0C8F1 98 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 CHTF8P0CG12 524 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 IGHV3-43DP0DP04 118 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 DDTP30046 118 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 MIPP30301 263 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 PRSS3P35030 304 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 IHHQ14623 411 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 BRMS1LQ5PSV4 323 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 SLC25A30Q5SVS4 291 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 AKR1C8PQ5T2L2 129 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 CYHR1Q6ZMK1 362 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 GRINAQ7Z429 371 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 LINC00596Q86U02 117 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 PHF13Q86YI8 300 aaPredicted RBP1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 DOLPP1Q86YN1 238 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 MUC15Q8N387 334 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 ANKRD29Q8N6D5 301 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 CSNK1G2-AS1Q8NCQ2 148 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 JOSD2Q8TAC2 188 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 MBD3L1Q8WWY6 194 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 CGREF1Q99674 301 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 MARVELD1Q9BSK0 173 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 DEFB127Q9H1M4 99 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 SS18L2Q9UHA2 77 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 SMPXQ9UHP9 88 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 WSB1Q9Y6I7 421 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 PRDM15P57071 1507 aaPredicted RBP1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 HMCN1Q96RW7 5635 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 SPTA1P02549 2419 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 CEP250Q9BV73 2442 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 MAP1LC3B2A6NCE7 125 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 B4DEV8 164 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 SLC17A3O00476 420 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 ARPC5O15511 151 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 SLC25A14O95258 325 aaPredicted RBP1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 SCGB1A1P11684 91 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 GABRR1P24046 479 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 SRP9P49458 86 aaKnown RBP1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 RAB5BP61020 215 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 PAX8Q06710 450 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 JOSD1Q15040 202 aaPredicted RBP1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 IRF4Q15306 451 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 ACOT6Q3I5F7 207 aaPredicted RBP1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 ABCA11PQ4W5N1 156 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 TCTEX1D4Q5JR98 221 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 ELP2Q6IA86 826 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 ARIH2OSQ8N7S6 290 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 NKAPP1Q8N9T2 125 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 YIPF5Q969M3 257 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 RBMXL1Q96E39 390 aaKnown RBP1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 NEURL3Q96EH8 262 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 FAM19A4Q96LR4 140 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 CNBD2Q96M20 576 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 YPEL4Q96NS1 127 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 PPP1R2P1Q96PQ5 205 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 MAP1LC3BQ9GZQ8 125 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 MIXL1Q9H2W2 232 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 ERVK-7P63135 1459 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 ZNF518AQ6AHZ1 1483 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 TRIP12Q14669 1992 aaPredicted RBP1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 A0A0G2JN53 185 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 SHISA9B4DS77 424 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 PPP1R3DO95685 299 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 TRBV12-3P01733 135 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 FBP1P09467 338 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 NBEAP1P0C6P0 100 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 OR12D1P0DN82 309 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 ZNF30P17039 623 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 INPP1P49441 399 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 ZNF138P52744 262 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 PPP1CAP62136 330 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 PRR3P79522 188 aaKnown RBP1.79□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 115.5 ms