RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 DEFA1P59665 94 aa10□□□□□ -0.81
PTPRF-208ENST00000437607 DEFA3P59666 94 aa10□□□□□ -0.81
PTPRF-208ENST00000437607 DEFA6Q01524 100 aa10□□□□□ -0.81
PTPRF-208ENST00000437607 BAMBIQ13145 260 aa10□□□□□ -0.81
PTPRF-208ENST00000437607 BAK1Q16611 211 aa10□□□□□ -0.81
PTPRF-208ENST00000437607 KRBOX4Q5JUW0 171 aa10□□□□□ -0.81
PTPRF-208ENST00000437607 ATPAF1Q5TC12 328 aaPredicted RBP10□□□□□ -0.81
PTPRF-208ENST00000437607 RBMS3Q6XE24 437 aaKnown RBP10□□□□□ -0.81
PTPRF-208ENST00000437607 C17orf107Q6ZR85 190 aa10□□□□□ -0.81
PTPRF-208ENST00000437607 ZNRF1Q8ND25 227 aa10□□□□□ -0.81
PTPRF-208ENST00000437607 OR4S1Q8NGB4 309 aa10□□□□□ -0.81
PTPRF-208ENST00000437607 OR5D13Q8NGL4 314 aa10□□□□□ -0.81
PTPRF-208ENST00000437607 PLPPR1Q8TBJ4 325 aa10□□□□□ -0.81
PTPRF-208ENST00000437607 SLC25A10Q9UBX3 287 aaPredicted RBP10□□□□□ -0.81
PTPRF-208ENST00000437607 MTFP1Q9UDX5 166 aa10□□□□□ -0.81
PTPRF-208ENST00000437607 MGAT4AQ9UM21 535 aa10□□□□□ -0.81
PTPRF-208ENST00000437607 A0A1B0GW55 424 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 K7N7A8 449 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 NAPSAO96009 420 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 TK1P04183 234 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 FCER2P06734 321 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 DUX4L2P0CJ85 424 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 DUX4L3P0CJ86 424 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 DUX4L4P0CJ87 422 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 DUX4L5P0CJ88 424 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 DUX4L6P0CJ89 424 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 DUX4L7P0CJ90 424 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 IGHV4-38-2P0DP08 117 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 P2RX3P56373 397 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 TAS2R46P59540 309 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 TAS2R19P59542 299 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 ARPC4P59998 168 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 PAX2Q02962 417 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 PAX8Q06710 450 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 SLC9A3R2Q15599 337 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 ACTBL2Q562R1 376 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 RSBN1Q5VWQ0 802 aaPredicted RBP9.99□□□□□ -0.81
PTPRF-208ENST00000437607 DUX4L9Q6RFH8 374 aaPredicted RBP9.99□□□□□ -0.81
PTPRF-208ENST00000437607 ZNF497Q6ZNH5 498 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 BEST4Q8NFU0 473 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 MRPL30Q8TCC3 161 aaKnown RBP9.99□□□□□ -0.81
PTPRF-208ENST00000437607 NEIL1Q96FI4 390 aaPredicted RBP9.99□□□□□ -0.81
PTPRF-208ENST00000437607 CYYR1Q96J86 154 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 KAAG1Q9UBP8 84 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 DUX4Q9UBX2 424 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 KLK11Q9UBX7 282 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 MIOXQ9UGB7 285 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 ZNF107Q9UII5 783 aaPredicted RBP9.99□□□□□ -0.81
PTPRF-208ENST00000437607 KIF25Q9UIL4 384 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 TRAPPC2LQ9UL33 140 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 ANAPC10Q9UM13 185 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 RBMX2Q9Y388 322 aaKnown RBP9.99□□□□□ -0.81
PTPRF-208ENST00000437607 MAB21L2Q9Y586 359 aa9.99□□□□□ -0.81
PTPRF-208ENST00000437607 IGHV3OR16-10A0A075B7F0 116 aa9.98□□□□□ -0.81
PTPRF-208ENST00000437607 MEIKINA0A087WXM9 373 aa9.98□□□□□ -0.81
PTPRF-208ENST00000437607 TRBV6-6A0A0A6YYG2 114 aa9.98□□□□□ -0.81
PTPRF-208ENST00000437607 KIR2DS1A0A191URI9 304 aa9.98□□□□□ -0.81
PTPRF-208ENST00000437607 CLDN34H7C241 214 aa9.98□□□□□ -0.81
PTPRF-208ENST00000437607 LANCL1O43813 399 aa9.98□□□□□ -0.81
PTPRF-208ENST00000437607 TBPP20226 339 aa9.98□□□□□ -0.81
PTPRF-208ENST00000437607 MDKP21741 143 aaPredicted RBP9.98□□□□□ -0.81
PTPRF-208ENST00000437607 KIR2DS4P43632 304 aa9.98□□□□□ -0.81
PTPRF-208ENST00000437607 HLA-DRB3P79483 266 aa9.98□□□□□ -0.81
PTPRF-208ENST00000437607 PAX5Q02548 391 aa9.98□□□□□ -0.81
PTPRF-208ENST00000437607 AESQ08117 197 aa9.98□□□□□ -0.81
PTPRF-208ENST00000437607 KIR2DS1Q14954 304 aa9.98□□□□□ -0.81
PTPRF-208ENST00000437607 C6orf183Q5T699 404 aa9.98□□□□□ -0.81
PTPRF-208ENST00000437607 STEAP3Q658P3 488 aa9.98□□□□□ -0.81
PTPRF-208ENST00000437607 SLC35E4Q6ICL7 350 aa9.98□□□□□ -0.81
PTPRF-208ENST00000437607 TRAT1Q6PIZ9 186 aa9.98□□□□□ -0.81
PTPRF-208ENST00000437607 HOGA1Q86XE5 327 aa9.98□□□□□ -0.81
PTPRF-208ENST00000437607 LYSMD2Q8IV50 215 aa9.98□□□□□ -0.81
PTPRF-208ENST00000437607 GVQW1Q8N7I0 195 aa9.98□□□□□ -0.81
PTPRF-208ENST00000437607 OR4K15Q8NH41 348 aa9.98□□□□□ -0.81
PTPRF-208ENST00000437607 MAFIPQ8WZ33 124 aa9.98□□□□□ -0.81
PTPRF-208ENST00000437607 H1FXQ92522 213 aaKnown RBP9.98□□□□□ -0.81
PTPRF-208ENST00000437607 DACT3Q96B18 629 aaPredicted RBP9.98□□□□□ -0.81
PTPRF-208ENST00000437607 COQ2Q96H96 371 aa9.98□□□□□ -0.81
PTPRF-208ENST00000437607 OCSTAMPQ9BR26 566 aa9.98□□□□□ -0.81
PTPRF-208ENST00000437607 ST6GALNAC5Q9BVH7 336 aa9.98□□□□□ -0.81
PTPRF-208ENST00000437607 CTSZQ9UBR2 303 aa9.98□□□□□ -0.81
PTPRF-208ENST00000437607 ZNF230Q9UIE0 474 aaPredicted RBP9.98□□□□□ -0.81
PTPRF-208ENST00000437607 DNAH3Q8TD57 4116 aa9.97□□□□□ -0.81
PTPRF-208ENST00000437607 LINC00854A0A1B0GVQ3 168 aa9.97□□□□□ -0.81
PTPRF-208ENST00000437607 MDFIC2A0A1B0GVS7 189 aa9.97□□□□□ -0.81
PTPRF-208ENST00000437607 ANKRD20A5PA0PJZ0 165 aa9.97□□□□□ -0.81
PTPRF-208ENST00000437607 ODAMA1E959 279 aa9.97□□□□□ -0.81
PTPRF-208ENST00000437607 POM121CA8CG34 1229 aa9.97□□□□□ -0.81
PTPRF-208ENST00000437607 CENPXA8MT69 81 aa9.97□□□□□ -0.81
PTPRF-208ENST00000437607 ZNF736B4DX44 427 aaPredicted RBP9.97□□□□□ -0.81
PTPRF-208ENST00000437607 DVL1O14640 695 aa9.97□□□□□ -0.81
PTPRF-208ENST00000437607 ORC5O43913 435 aa9.97□□□□□ -0.81
PTPRF-208ENST00000437607 WNT2P09544 360 aa9.97□□□□□ -0.81
PTPRF-208ENST00000437607 AKAIN1P0CW23 69 aa9.97□□□□□ -0.81
PTPRF-208ENST00000437607 ERP29P30040 261 aaKnown RBP9.97□□□□□ -0.81
PTPRF-208ENST00000437607 KLF9Q13886 244 aaPredicted RBP9.97□□□□□ -0.81
PTPRF-208ENST00000437607 RNASE10Q5GAN6 216 aaKnown RBP9.97□□□□□ -0.81
PTPRF-208ENST00000437607 LYPD2Q6UXB3 125 aa9.97□□□□□ -0.81
PTPRF-208ENST00000437607 C9orf139Q6ZV77 190 aa9.97□□□□□ -0.81
PTPRF-208ENST00000437607 TPRX1Q8N7U7 411 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms