RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 ANKRD30BLA7E2S9 258 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 CD300LBA8K4G0 201 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 CDRT15L2A8MXV6 281 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 PATE3B3GLJ2 98 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 H3BQ15 152 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 CST7O76096 145 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 SCAF4O95104 1147 aaKnown RBP9.65□□□□□ -0.86
USP4-205ENST00000431357 IFNA5P01569 189 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 HLA-HP01893 362 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 CLDN18P56856 261 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 NUTF2P61970 127 aaKnown RBP9.65□□□□□ -0.86
USP4-205ENST00000431357 HLA-DRB3P79483 266 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 KHDC3LQ587J8 217 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 ZNF324BQ6AW86 544 aaPredicted RBP9.65□□□□□ -0.86
USP4-205ENST00000431357 PCSK4Q6UW60 755 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 HEPN1Q6WQI6 88 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 OR2M7Q8NG81 312 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 OR10G4Q8NGN3 311 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 OR10J5Q8NHC4 309 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 OR5P3Q8WZ94 311 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 POM121L2Q96KW2 1035 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 HS3ST6Q96QI5 342 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 CABLES2Q9BTV7 478 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 ABHD14AQ9BUJ0 271 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 PKIBQ9C010 78 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 ZNF703Q9H7S9 590 aaPredicted RBP9.65□□□□□ -0.86
USP4-205ENST00000431357 SIRT7Q9NRC8 400 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 CHTOPQ9Y3Y2 248 aaKnown RBP9.65□□□□□ -0.86
USP4-205ENST00000431357 SHANK1Q9Y566 2161 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 ARID1AO14497 2285 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 A0A1W2PPE3 182 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 CXorf65A6NEN9 183 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 NPIPB11E5RHQ5 1161 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 TSTD3H0UI37 97 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 DEGS1O15121 323 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 TMEM50AO95807 157 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 ACP1P24666 158 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 PAX9P55771 341 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 GNG3P63215 75 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 SLC23A3Q6PIS1 610 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 TUSC5Q8IXB3 177 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 H1FOOQ8IZA3 346 aaPredicted RBP9.64□□□□□ -0.87
USP4-205ENST00000431357 PRR18Q8N4B5 295 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 LSM10Q969L4 123 aaKnown RBP9.64□□□□□ -0.87
USP4-205ENST00000431357 APH1AQ96BI3 265 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 MUCL1Q96DR8 90 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 TVP23CQ96ET8 276 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 THOC3Q96J01 351 aaKnown RBP9.64□□□□□ -0.87
USP4-205ENST00000431357 PRRG4Q9BZD6 226 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 CALHM2Q9HA72 323 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 PRDM6Q9NQX0 595 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 TAAR3PQ9P1P4 343 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 ABI3Q9P2A4 366 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 LOXL2Q9Y4K0 774 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 TNRC6AQ8NDV7 1962 aaKnown RBP9.64□□□□□ -0.87
USP4-205ENST00000431357 SDK2Q58EX2 2172 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 SYNGR1O43759 233 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 SERPINE2P07093 398 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 CBR1P16152 277 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 HIST1H1BP16401 226 aaKnown RBP9.64□□□□□ -0.87
USP4-205ENST00000431357 TAGLN2P37802 199 aaKnown RBP9.64□□□□□ -0.87
USP4-205ENST00000431357 UBE2KP61086 200 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 SRYQ05066 204 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 ZNF154Q13106 437 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 ICAM4Q14773 271 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 TGIF1Q15583 401 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 SPINK14Q6IE38 97 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 TIPARPQ7Z3E1 657 aaKnown RBP9.64□□□□□ -0.87
USP4-205ENST00000431357 ZNF429Q86V71 674 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 FAM58AQ8N1B3 248 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 TMEM217Q8N7C4 229 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 CLDND2Q8NHS1 167 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 GPR146Q96CH1 333 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 RAB39BQ96DA2 213 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 CRIM1Q9NZV1 1036 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 RNF150Q9ULK6 438 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 LIPGQ9Y5X9 500 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 WSB1Q9Y6I7 421 aa9.64□□□□□ -0.87
USP4-205ENST00000431357 CNOT4O95628 575 aaKnown RBP9.63□□□□□ -0.87
USP4-205ENST00000431357 LY86O95711 162 aa9.63□□□□□ -0.87
USP4-205ENST00000431357 OR8U8P0C7N1 319 aa9.63□□□□□ -0.87
USP4-205ENST00000431357 CCL2P13500 99 aa9.63□□□□□ -0.87
USP4-205ENST00000431357 PAX1P15863 534 aa9.63□□□□□ -0.87
USP4-205ENST00000431357 DDTP30046 118 aa9.63□□□□□ -0.87
USP4-205ENST00000431357 MDH2P40926 338 aaKnown RBP9.63□□□□□ -0.87
USP4-205ENST00000431357 HAGHQ16775 308 aa9.63□□□□□ -0.87
USP4-205ENST00000431357 ABHD17BQ5VST6 288 aa9.63□□□□□ -0.87
USP4-205ENST00000431357 C9orf135Q5VTT2 229 aa9.63□□□□□ -0.87
USP4-205ENST00000431357 MOB1BQ7L9L4 216 aa9.63□□□□□ -0.87
USP4-205ENST00000431357 C5orf24Q7Z6I8 188 aa9.63□□□□□ -0.87
USP4-205ENST00000431357 SLC35E3Q7Z769 313 aa9.63□□□□□ -0.87
USP4-205ENST00000431357 R3HDM4Q96D70 268 aa9.63□□□□□ -0.87
USP4-205ENST00000431357 MEGF10Q96KG7 1140 aa9.63□□□□□ -0.87
USP4-205ENST00000431357 NIPSNAP3BQ9BS92 247 aa9.63□□□□□ -0.87
USP4-205ENST00000431357 STRADBQ9C0K7 418 aa9.63□□□□□ -0.87
USP4-205ENST00000431357 ZNF552Q9H707 407 aaPredicted RBP9.63□□□□□ -0.87
USP4-205ENST00000431357 IL36RNQ9UBH0 155 aa9.63□□□□□ -0.87
USP4-205ENST00000431357 RFNGQ9Y644 331 aa9.63□□□□□ -0.87
USP4-205ENST00000431357 TRIOO75962 3097 aa9.63□□□□□ -0.87
USP4-205ENST00000431357 B4DEV8 164 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms