RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 EDARADDQ8WWZ3 215 aa8.34□□□□□ -1.07
CD44-207ENST00000425428 GCDHQ92947 438 aaPredicted RBP8.34□□□□□ -1.07
CD44-207ENST00000425428 FAHD2AQ96GK7 314 aa8.34□□□□□ -1.07
CD44-207ENST00000425428 IDI2-AS1Q9NZ38 188 aa8.34□□□□□ -1.07
CD44-207ENST00000425428 KLK11Q9UBX7 282 aa8.34□□□□□ -1.07
CD44-207ENST00000425428 SCP2D1Q9UJQ7 156 aa8.34□□□□□ -1.07
CD44-207ENST00000425428 ELF5Q9UKW6 265 aaPredicted RBP8.34□□□□□ -1.07
CD44-207ENST00000425428 KCNS2Q9ULS6 477 aa8.34□□□□□ -1.07
CD44-207ENST00000425428 FBN2P35556 2912 aa8.34□□□□□ -1.07
CD44-207ENST00000425428 FLNBO75369 2602 aaKnown RBP8.34□□□□□ -1.08
CD44-207ENST00000425428 NOTCH2Q04721 2471 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 FAM157AC9JC47 383 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 SSX5O60225 188 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 RAB3DO95716 219 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 HLA-DMAP28067 261 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 S100GP29377 79 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 HERV-K104P61576 105 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 ARF6P62330 175 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 HTD2P86397 168 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 CDK10Q15131 360 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 LTC4SQ16873 150 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 STEAP1BQ6NZ63 245 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 MZT2BQ6NZ67 158 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 HEPN1Q6WQI6 88 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 GVQW1Q8N7I0 195 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 LY6G5BQ8NDX9 201 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 OR52M1Q8NGK5 317 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 OR6F1Q8NGZ6 308 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 RFESDQ8TAC1 157 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 MAFIPQ8WZ33 124 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 KIRREL1Q96J84 757 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 ABCB10Q9NRK6 738 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 MCUBQ9NWR8 336 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 HIF1ANQ9NWT6 349 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 EHFQ9NZC4 300 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 SLC23A1Q9UHI7 598 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 JPT1Q9UK76 154 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 AUP1Q9Y679 476 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 SESN1Q9Y6P5 492 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 TRAV39A0A0B4J263 110 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 FAM172BPA6NC97 362 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 NAP1L6A6NFF2 107 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 C12orf77C9JDV5 145 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 FCER2P06734 321 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 HNF1AP20823 631 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 ZFP36P26651 326 aaKnown RBP8.33□□□□□ -1.08
CD44-207ENST00000425428 IL3RAP26951 378 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 CEACAM6P40199 344 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 LGALS4P56470 323 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 ZNF273Q14593 569 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 HMGN3Q15651 99 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 ZNF79Q15937 498 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 RTN4RL2Q86UN3 420 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 MFSD4AQ8N468 514 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 CREB3L1Q96BA8 519 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 C1orf159Q96HA4 380 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 C18orf12Q96KH6 178 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 SCGB3A2Q96PL1 93 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 C7orf50Q9BRJ6 194 aaKnown RBP8.33□□□□□ -1.08
CD44-207ENST00000425428 PCGF1Q9BSM1 259 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 C7orf69Q9H7B7 122 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 ZNF69Q9UC07 566 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 INSIG2Q9Y5U4 225 aa8.33□□□□□ -1.08
CD44-207ENST00000425428 CR1P17927 2039 aa8.32□□□□□ -1.08
CD44-207ENST00000425428 ARHGAP32A7KAX9 2087 aa8.32□□□□□ -1.08
CD44-207ENST00000425428 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.32□□□□□ -1.08
CD44-207ENST00000425428 MEX3AA1L020 520 aaKnown RBP8.32□□□□□ -1.08
CD44-207ENST00000425428 KIAA1324LA8MWY0 1029 aaPredicted RBP8.32□□□□□ -1.08
CD44-207ENST00000425428 C22orf46C9J442 243 aa8.32□□□□□ -1.08
CD44-207ENST00000425428 PMP2P02689 132 aa8.32□□□□□ -1.08
CD44-207ENST00000425428 SCTP09683 121 aa8.32□□□□□ -1.08
CD44-207ENST00000425428 GSTT2P0CG29 244 aa8.32□□□□□ -1.08
CD44-207ENST00000425428 OR5H8P0DN80 308 aa8.32□□□□□ -1.08
CD44-207ENST00000425428 IGHV1-8P0DP01 117 aa8.32□□□□□ -1.08
CD44-207ENST00000425428 IL7P13232 177 aa8.32□□□□□ -1.08
CD44-207ENST00000425428 CCL3L1P16619 93 aa8.32□□□□□ -1.08
CD44-207ENST00000425428 NAT1P18440 290 aa8.32□□□□□ -1.08
CD44-207ENST00000425428 SSTR5P35346 364 aa8.32□□□□□ -1.08
CD44-207ENST00000425428 HRH1P35367 487 aa8.32□□□□□ -1.08
CD44-207ENST00000425428 ECI1P42126 302 aa8.32□□□□□ -1.08
CD44-207ENST00000425428 RAB7AP51149 207 aa8.32□□□□□ -1.08
CD44-207ENST00000425428 SCGB2A2Q13296 93 aa8.32□□□□□ -1.08
CD44-207ENST00000425428 DYRK1AQ13627 763 aa8.32□□□□□ -1.08
CD44-207ENST00000425428 LPCAT3Q6P1A2 487 aa8.32□□□□□ -1.08
CD44-207ENST00000425428 ZNF782Q6ZMW2 699 aaPredicted RBP8.32□□□□□ -1.08
CD44-207ENST00000425428 FGFRL1Q8N441 504 aa8.32□□□□□ -1.08
CD44-207ENST00000425428 ARRDC1Q8N5I2 433 aa8.32□□□□□ -1.08
CD44-207ENST00000425428 MAPK1IP1LQ8NDC0 245 aa8.32□□□□□ -1.08
CD44-207ENST00000425428 OR2AK2Q8NG84 335 aa8.32□□□□□ -1.08
CD44-207ENST00000425428 ZNF596Q8TC21 504 aa8.32□□□□□ -1.08
CD44-207ENST00000425428 FAM216AQ8WUB2 273 aa8.32□□□□□ -1.08
CD44-207ENST00000425428 PRRT1Q99946 306 aa8.32□□□□□ -1.08
CD44-207ENST00000425428 GHITMQ9H3K2 345 aa8.32□□□□□ -1.08
CD44-207ENST00000425428 RBMX2Q9Y388 322 aaKnown RBP8.32□□□□□ -1.08
CD44-207ENST00000425428 AMMECR1Q9Y4X0 333 aaPredicted RBP8.32□□□□□ -1.08
CD44-207ENST00000425428 MED13LQ71F56 2210 aa8.31□□□□□ -1.08
CD44-207ENST00000425428 CREBBPQ92793 2442 aa8.31□□□□□ -1.08
CD44-207ENST00000425428 ANKRD20A5PA0PJZ0 165 aa8.31□□□□□ -1.08
CD44-207ENST00000425428 C17orf98A8MV24 154 aa8.31□□□□□ -1.08
CD44-207ENST00000425428 NPIPB11E5RHQ5 1161 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms