RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 C9orf170A2RU37 121 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 NPFFO15130 113 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 B4GALT3O60512 393 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 SFT2D2O95562 160 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 DCTDP32321 178 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 AQP10Q96PS8 301 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 FAM186AA6NE01 2351 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 TRBV5-4A0A0C4DH59 114 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 TMEM262E9PQX1 116 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 FOXH1O75593 365 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 RPS20P60866 119 aaKnown RBP6.04□□□□□ -1.44
SCN1A-204ENST00000423058 ATP5G2Q06055 141 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 PAPPA-AS1Q5QFB9 102 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 BPIFA4PQ86YQ2 179 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 OR2D3Q8NGH3 330 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 ZNF768Q9H5H4 540 aaKnown RBP6.04□□□□□ -1.44
SCN1A-204ENST00000423058 Q9N2K0 584 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 CCL27Q9Y4X3 112 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 ZNF831Q5JPB2 1677 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 J3QR06 171 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 NUDT3O95989 172 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 BTF3P20290 206 aaKnown RBP6.03□□□□□ -1.44
SCN1A-204ENST00000423058 B4GALNT1Q00973 533 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 NKG7Q16617 165 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 SIGIRRQ6IA17 410 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 DPPA3Q6W0C5 159 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 BVESQ8NE79 360 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 SYT11Q9BT88 431 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 RSG1Q9BU20 258 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 COL25A1Q9BXS0 654 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-204ENST00000423058 C17orf51A8MQB3 221 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 LMX1BO60663 402 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 SRSF10O75494 262 aaKnown RBP6.03□□□□□ -1.44
SCN1A-204ENST00000423058 PMELP40967 661 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 TSPAN7P41732 249 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 CACNG7P62955 275 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 HIST3H3Q16695 136 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 PCSK4Q6UW60 755 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 Q6ZNX1 250 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 ABCA1O95477 2261 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 PLPP2O43688 288 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 GFRA3O60609 400 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 IGHV3-13P01766 116 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 IGHV3-7P01780 117 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 WNT1P04628 370 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 CTSDP07339 412 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-204ENST00000423058 SAMD13Q5VXD3 122 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 SLC23A3Q6PIS1 610 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 SCNM1Q9BWG6 230 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 A0A1W2PQD3 144 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 FAM74A7A6NL05 159 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 EDIL3O43854 480 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 KLK8O60259 260 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 NUBP1P53384 320 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 FAAP20Q6NZ36 180 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 GLDNQ6ZMI3 551 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-204ENST00000423058 TP53RKQ96S44 253 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 RASL10BQ96S79 203 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 ELOA3CA0A087WX78 387 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-204ENST00000423058 HYPMO75409 117 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 WNT5AP41221 380 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 SPRED3Q2MJR0 410 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 WDR38Q5JTN6 314 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 PRSS54Q6PEW0 395 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 YIPF6Q96EC8 236 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 PRELID3AQ96N28 172 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 SMDT1Q9H4I9 107 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 KCNE3Q9Y6H6 103 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 ZDBF2Q9HCK1 2354 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 GREB1Q4ZG55 1949 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 B4E171 279 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 PYCARD-AS1I3L0S3 204 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 NDUFB6O95139 128 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 CSN3P07498 182 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 P2RY1P47900 373 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 TMEM33P57088 247 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 HLA-DRB3P79483 266 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 INPP5JQ15735 1006 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-204ENST00000423058 ZNF502Q8TBZ5 544 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 ABHD14BQ96IU4 210 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 PAXXQ9BUH6 204 aa6.03□□□□□ -1.44
SCN1A-204ENST00000423058 DNAJB12Q9NXW2 375 aaKnown RBP6.03□□□□□ -1.44
SCN1A-204ENST00000423058 PRKNO60260 465 aaPredicted RBP6.02□□□□□ -1.44
SCN1A-204ENST00000423058 TBX19O60806 448 aa6.02□□□□□ -1.44
SCN1A-204ENST00000423058 FUCA1P04066 466 aa6.02□□□□□ -1.44
SCN1A-204ENST00000423058 STARD6P59095 220 aa6.02□□□□□ -1.44
SCN1A-204ENST00000423058 HLA-DRB5Q30154 266 aa6.02□□□□□ -1.44
SCN1A-204ENST00000423058 CNRIP1Q96F85 164 aaPredicted RBP6.02□□□□□ -1.44
SCN1A-204ENST00000423058 WBP1LQ9NX94 342 aa6.02□□□□□ -1.44
SCN1A-204ENST00000423058 VAX2Q9UIW0 290 aa6.02□□□□□ -1.44
SCN1A-204ENST00000423058 TMEM189A5PLL7 270 aa6.02□□□□□ -1.45
SCN1A-204ENST00000423058 ISL1P61371 349 aa6.02□□□□□ -1.45
SCN1A-204ENST00000423058 MRPL13Q9BYD1 178 aaKnown RBP6.02□□□□□ -1.45
SCN1A-204ENST00000423058 SIGLEC7Q9Y286 467 aa6.02□□□□□ -1.45
SCN1A-204ENST00000423058 M0QZK8 103 aa6.02□□□□□ -1.45
SCN1A-204ENST00000423058 GGCTO75223 188 aaKnown RBP6.02□□□□□ -1.45
SCN1A-204ENST00000423058 TTRP02766 147 aa6.02□□□□□ -1.45
SCN1A-204ENST00000423058 AESQ08117 197 aa6.02□□□□□ -1.45
SCN1A-204ENST00000423058 SURF2Q15527 256 aaPredicted RBP6.02□□□□□ -1.45
SCN1A-204ENST00000423058 EEF1AKMT3Q96AZ1 226 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms