RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 LRRC75BQ2VPJ9 315 aa9.42□□□□□ -0.9
LIMS1-207ENST00000422797 COA6Q5JTJ3 125 aaKnown RBP9.42□□□□□ -0.9
LIMS1-207ENST00000422797 ZNF324BQ6AW86 544 aaPredicted RBP9.42□□□□□ -0.9
LIMS1-207ENST00000422797 ZNF343Q6P1L6 599 aa9.42□□□□□ -0.9
LIMS1-207ENST00000422797 CYP2G1PQ6ZSU1 146 aa9.42□□□□□ -0.9
LIMS1-207ENST00000422797 TMEM183AQ8IXX5 376 aa9.42□□□□□ -0.9
LIMS1-207ENST00000422797 ZNF525Q8N782 197 aa9.42□□□□□ -0.9
LIMS1-207ENST00000422797 OR56B2PQ8NGI1 322 aa9.42□□□□□ -0.9
LIMS1-207ENST00000422797 CA5BP1Q8WTZ4 195 aa9.42□□□□□ -0.9
LIMS1-207ENST00000422797 PSMF1Q92530 271 aa9.42□□□□□ -0.9
LIMS1-207ENST00000422797 GPR146Q96CH1 333 aa9.42□□□□□ -0.9
LIMS1-207ENST00000422797 ACY3Q96HD9 319 aa9.42□□□□□ -0.9
LIMS1-207ENST00000422797 NOL4LQ96MY1 436 aaPredicted RBP9.42□□□□□ -0.9
LIMS1-207ENST00000422797 PYGO2Q9BRQ0 406 aa9.42□□□□□ -0.9
LIMS1-207ENST00000422797 SMOC1Q9H4F8 434 aa9.42□□□□□ -0.9
LIMS1-207ENST00000422797 PRDM13Q9H4Q3 707 aa9.42□□□□□ -0.9
LIMS1-207ENST00000422797 MANBALQ9NQG1 85 aa9.42□□□□□ -0.9
LIMS1-207ENST00000422797 MPC1Q9Y5U8 109 aa9.42□□□□□ -0.9
LIMS1-207ENST00000422797 U3KQA8 63 aa9.42□□□□□ -0.9
LIMS1-207ENST00000422797 TNRC6BQ9UPQ9 1833 aaKnown RBP9.42□□□□□ -0.9
LIMS1-207ENST00000422797 KIAA1324LA8MWY0 1029 aaPredicted RBP9.41□□□□□ -0.9
LIMS1-207ENST00000422797 MKRN2OSH3BPM6 223 aa9.41□□□□□ -0.9
LIMS1-207ENST00000422797 SS18L1O75177 396 aaPredicted RBP9.41□□□□□ -0.9
LIMS1-207ENST00000422797 LY86O95711 162 aa9.41□□□□□ -0.9
LIMS1-207ENST00000422797 EPHA1P21709 976 aa9.41□□□□□ -0.9
LIMS1-207ENST00000422797 ARR3P36575 388 aa9.41□□□□□ -0.9
LIMS1-207ENST00000422797 DUSP3P51452 185 aaPredicted RBP9.41□□□□□ -0.9
LIMS1-207ENST00000422797 RAB4BP61018 213 aa9.41□□□□□ -0.9
LIMS1-207ENST00000422797 SPNS3Q6ZMD2 512 aa9.41□□□□□ -0.9
LIMS1-207ENST00000422797 CENPVQ7Z7K6 275 aaPredicted RBP9.41□□□□□ -0.9
LIMS1-207ENST00000422797 Q8IYB0 196 aa9.41□□□□□ -0.9
LIMS1-207ENST00000422797 TDHQ8IZJ6 230 aa9.41□□□□□ -0.9
LIMS1-207ENST00000422797 LILRB2Q8N423 598 aa9.41□□□□□ -0.9
LIMS1-207ENST00000422797 OR10V1Q8NGI7 309 aa9.41□□□□□ -0.9
LIMS1-207ENST00000422797 OR10D3Q8NH80 312 aa9.41□□□□□ -0.9
LIMS1-207ENST00000422797 MRPL30Q8TCC3 161 aaKnown RBP9.41□□□□□ -0.9
LIMS1-207ENST00000422797 PACRGQ96M98 296 aaPredicted RBP9.41□□□□□ -0.9
LIMS1-207ENST00000422797 OR5B12Q96R08 314 aa9.41□□□□□ -0.9
LIMS1-207ENST00000422797 IER2Q9BTL4 223 aa9.41□□□□□ -0.9
LIMS1-207ENST00000422797 RPRMQ9NS64 109 aa9.41□□□□□ -0.9
LIMS1-207ENST00000422797 PSENENQ9NZ42 101 aa9.41□□□□□ -0.9
LIMS1-207ENST00000422797 URGCP-MRPS24S4R325 110 aa9.41□□□□□ -0.9
LIMS1-207ENST00000422797 NCOA6Q14686 2063 aaPredicted RBP9.41□□□□□ -0.9
LIMS1-207ENST00000422797 KIAA1549Q9HCM3 1950 aa9.41□□□□□ -0.9
LIMS1-207ENST00000422797 MAP1LC3B2A6NCE7 125 aa9.41□□□□□ -0.9
LIMS1-207ENST00000422797 PAX1P15863 534 aa9.41□□□□□ -0.9
LIMS1-207ENST00000422797 GPX4P36969 197 aaPredicted RBP9.41□□□□□ -0.9
LIMS1-207ENST00000422797 MSMO1Q15800 293 aa9.41□□□□□ -0.9
LIMS1-207ENST00000422797 NCR3LG1Q68D85 454 aa9.41□□□□□ -0.9
LIMS1-207ENST00000422797 PCSK4Q6UW60 755 aa9.41□□□□□ -0.9
LIMS1-207ENST00000422797 ZBTB34Q8NCN2 500 aa9.41□□□□□ -0.9
LIMS1-207ENST00000422797 SAP25Q8TEE9 199 aa9.41□□□□□ -0.9
LIMS1-207ENST00000422797 FRZBQ92765 325 aa9.41□□□□□ -0.9
LIMS1-207ENST00000422797 ANAPC16Q96DE5 110 aa9.41□□□□□ -0.9
LIMS1-207ENST00000422797 GPR61Q9BZJ8 451 aa9.41□□□□□ -0.9
LIMS1-207ENST00000422797 MAP1LC3BQ9GZQ8 125 aa9.41□□□□□ -0.9
LIMS1-207ENST00000422797 WNT16Q9UBV4 365 aa9.41□□□□□ -0.9
LIMS1-207ENST00000422797 SPAG17Q6Q759 2223 aa9.4□□□□□ -0.9
LIMS1-207ENST00000422797 IGKV1-6A0A0C4DH72 117 aa9.4□□□□□ -0.91
LIMS1-207ENST00000422797 ZFP92A6NM28 416 aa9.4□□□□□ -0.91
LIMS1-207ENST00000422797 ANKRD30BLA7E2S9 258 aa9.4□□□□□ -0.91
LIMS1-207ENST00000422797 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.4□□□□□ -0.91
LIMS1-207ENST00000422797 J3QW42 95 aa9.4□□□□□ -0.91
LIMS1-207ENST00000422797 MRPL33O75394 65 aaKnown RBP9.4□□□□□ -0.91
LIMS1-207ENST00000422797 KLF7O75840 302 aaPredicted RBP9.4□□□□□ -0.91
LIMS1-207ENST00000422797 KBTBD11O94819 623 aa9.4□□□□□ -0.91
LIMS1-207ENST00000422797 GCGP01275 180 aa9.4□□□□□ -0.91
LIMS1-207ENST00000422797 SOD3P08294 240 aa9.4□□□□□ -0.91
LIMS1-207ENST00000422797 METTL15P1P0C7V9 234 aa9.4□□□□□ -0.91
LIMS1-207ENST00000422797 DDTP30046 118 aa9.4□□□□□ -0.91
LIMS1-207ENST00000422797 PSMB3P49720 205 aa9.4□□□□□ -0.91
LIMS1-207ENST00000422797 GPM6AP51674 278 aa9.4□□□□□ -0.91
LIMS1-207ENST00000422797 FAM3BP58499 235 aaPredicted RBP9.4□□□□□ -0.91
LIMS1-207ENST00000422797 GNG3P63215 75 aa9.4□□□□□ -0.91
LIMS1-207ENST00000422797 JOSD1Q15040 202 aaPredicted RBP9.4□□□□□ -0.91
LIMS1-207ENST00000422797 TMEM241Q24JQ0 296 aa9.4□□□□□ -0.91
LIMS1-207ENST00000422797 ACOT6Q3I5F7 207 aaPredicted RBP9.4□□□□□ -0.91
LIMS1-207ENST00000422797 C9orf152Q5JTZ5 239 aa9.4□□□□□ -0.91
LIMS1-207ENST00000422797 LYSMD4Q5XG99 296 aa9.4□□□□□ -0.91
LIMS1-207ENST00000422797 P4HA3Q7Z4N8 544 aa9.4□□□□□ -0.91
LIMS1-207ENST00000422797 YRDCQ86U90 279 aaKnown RBP9.4□□□□□ -0.91
LIMS1-207ENST00000422797 TCTEX1D1Q8N7M0 179 aa9.4□□□□□ -0.91
LIMS1-207ENST00000422797 NAXEQ8NCW5 288 aa9.4□□□□□ -0.91
LIMS1-207ENST00000422797 ZNF845Q96IR2 970 aaPredicted RBP9.4□□□□□ -0.91
LIMS1-207ENST00000422797 ACTR3CQ9C0K3 210 aaPredicted RBP9.4□□□□□ -0.91
LIMS1-207ENST00000422797 WDR61Q9GZS3 305 aaKnown RBP9.4□□□□□ -0.91
LIMS1-207ENST00000422797 TMEM9BQ9NQ34 198 aa9.4□□□□□ -0.91
LIMS1-207ENST00000422797 OCIAD1Q9NX40 245 aa9.4□□□□□ -0.91
LIMS1-207ENST00000422797 OR14J1Q9UGF5 321 aa9.4□□□□□ -0.91
LIMS1-207ENST00000422797 BOKQ9UMX3 212 aaPredicted RBP9.4□□□□□ -0.91
LIMS1-207ENST00000422797 TRBV23-1A0A0A0MS06 115 aa9.39□□□□□ -0.91
LIMS1-207ENST00000422797 CTXND1A0A1B0GTU2 59 aa9.39□□□□□ -0.91
LIMS1-207ENST00000422797 CEBPZOSA8MTT3 80 aa9.39□□□□□ -0.91
LIMS1-207ENST00000422797 PHOX2AO14813 284 aa9.39□□□□□ -0.91
LIMS1-207ENST00000422797 VENTXO95231 258 aa9.39□□□□□ -0.91
LIMS1-207ENST00000422797 CELA2AP08217 269 aa9.39□□□□□ -0.91
LIMS1-207ENST00000422797 FABP4P15090 132 aa9.39□□□□□ -0.91
LIMS1-207ENST00000422797 SRP14P37108 136 aaKnown RBP9.39□□□□□ -0.91
LIMS1-207ENST00000422797 CEACAM6P40199 344 aa9.39□□□□□ -0.91
LIMS1-207ENST00000422797 CXCL12P48061 93 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 89.4 ms