RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 CCR2P41597 374 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 POLR2JP52435 117 aaKnown RBP4.08□□□□□ -1.76
VPS13A-207ENST00000419472 AKR1C2P52895 323 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 AKR1C1Q04828 323 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 TPBGQ13641 420 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 HIST2H3PS2Q5TEC6 136 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 GDPD4Q6W3E5 623 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 ZNF620Q6ZNG0 422 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 OR2W3Q7Z3T1 314 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 LRRTM1Q86UE6 522 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 HIST3H2BBQ8N257 126 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 OR4K2Q8NGD2 314 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 OR9Q1Q8NGQ5 310 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 OR13C8Q8NGS7 320 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 RARRES2Q99969 163 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 AIG1Q9NVV5 245 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 CHD5Q8TDI0 1954 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 ZFYVE26Q68DK2 2539 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 PHF3Q92576 2039 aaKnown RBP4.08□□□□□ -1.76
VPS13A-207ENST00000419472 USP24Q9UPU5 2620 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 DOCK4Q8N1I0 1966 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 DENND4CQ5VZ89 1909 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 OR1I1O60431 355 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 MPDU1O75352 247 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 CD79AP11912 226 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 PLA2G2AP14555 144 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 TBPP20226 339 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 HSD11B1P28845 292 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 RBM34P42696 430 aaKnown RBP4.08□□□□□ -1.76
VPS13A-207ENST00000419472 CDKN2DP55273 166 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 MTPNP58546 118 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 AP3S2P59780 193 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 SELENOTP62341 195 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 JOSD1Q15040 202 aaPredicted RBP4.08□□□□□ -1.76
VPS13A-207ENST00000419472 TSNQ15631 228 aaKnown RBP4.08□□□□□ -1.76
VPS13A-207ENST00000419472 C5orf47Q569G3 176 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 FAM53AQ6NSI3 398 aaPredicted RBP4.08□□□□□ -1.76
VPS13A-207ENST00000419472 ZNF774Q6NX45 483 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 BAP18Q8IXM2 172 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 OR51S1Q8NGJ8 323 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 OR2V1Q8NHB1 315 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 TERB2Q8NHR7 220 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 SMARCD2Q92925 531 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 POM121L2Q96KW2 1035 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 TMEM38AQ9H6F2 299 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 TREX1Q9NSU2 369 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 DOK5Q9P104 306 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 DNAJC15Q9Y5T4 150 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 COX11Q9Y6N1 276 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 ITPR3Q14573 2671 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 ASPMQ8IZT6 3477 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 A0A1B0GTH9 108 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 TMEM269A0A1B0GVZ9 245 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 A0A1W2PRF3 423 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 A0A1W2PRM7 423 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 A6NIZ1 184 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 OR5H1A6NKK0 313 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 A8MT66 165 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 SMIM1B2RUZ4 78 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 RNASEK-C17orf49H0YIS7 233 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 TNFSF11O14788 317 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 PHOX2AO14813 284 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 TGOLN2O43493 480 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 SEMG1P04279 462 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 NBEAP1P0C6P0 100 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 ELK1P19419 428 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 SLC2A5P22732 501 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 CD70P32970 193 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 NDUFV3P56181 108 aaKnown RBP4.08□□□□□ -1.76
VPS13A-207ENST00000419472 NDUFA6P56556 154 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 KLF3P57682 345 aaPredicted RBP4.08□□□□□ -1.76
VPS13A-207ENST00000419472 ERVPABLB-1P60509 514 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 PRPS1P60891 318 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 RHOAP61586 193 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 KHDC3LQ587J8 217 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 OR10K2Q6IF99 312 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 IL34Q6ZMJ4 242 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 GLT6D1Q7Z4J2 308 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 AQP11Q8NBQ7 271 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 OR10G7Q8NGN6 311 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 OR10A6Q8NH74 314 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 PIGXQ8TBF5 258 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 ZDHHC19Q8WVZ1 309 aaPredicted RBP4.08□□□□□ -1.76
VPS13A-207ENST00000419472 OR8D1Q8WZ84 308 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 RASL10AQ92737 203 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 ZNF524Q96C55 264 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 PACRGQ96M98 296 aaPredicted RBP4.08□□□□□ -1.76
VPS13A-207ENST00000419472 OR4K3Q96R72 315 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 S100A13Q99584 98 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 KLHDC3Q9BQ90 382 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 NRIP2Q9BQI9 281 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 C20orf85Q9H1P6 137 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 LINC00597Q9H2U6 94 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 MMP26Q9NRE1 261 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 TMEM100Q9NV29 134 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 GNG8Q9UK08 70 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 ZFP30Q9Y2G7 519 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 PYGO1Q9Y3Y4 419 aa4.08□□□□□ -1.76
VPS13A-207ENST00000419472 A0A0D9SG52 128 aa4.07□□□□□ -1.76
VPS13A-207ENST00000419472 SNRPGP15A8MWD9 76 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms