RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 FLRT3Q9NZU0 649 aa11.81□□□□□ -0.52
CCDC88A-204ENST00000413716 IGHV3-43A0A0B4J1X8 118 aa11.81□□□□□ -0.52
CCDC88A-204ENST00000413716 TCRBV16S1A1N1A0A5B0 115 aa11.81□□□□□ -0.52
CCDC88A-204ENST00000413716 ADAP1O75689 374 aa11.81□□□□□ -0.52
CCDC88A-204ENST00000413716 IGHV3-43DP0DP04 118 aa11.81□□□□□ -0.52
CCDC88A-204ENST00000413716 EMDP50402 254 aa11.81□□□□□ -0.52
CCDC88A-204ENST00000413716 NUBPLQ8TB37 319 aa11.81□□□□□ -0.52
CCDC88A-204ENST00000413716 TMEM262E9PQX1 116 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 H3BMH7 237 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 NKX2-8O15522 239 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 BAHD1Q8TBE0 780 aaPredicted RBP11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 TOX2Q96NM4 488 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 PARP11Q9NR21 331 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 B9D1Q9UPM9 204 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 DOCK2Q92608 1830 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 ZDBF2Q9HCK1 2354 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 METRNLQ641Q3 311 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 SNAI1O95863 264 aaPredicted RBP11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 C3orf80F5H4A9 247 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 TMEM250H0YL14 139 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 DMRTA1Q5VZB9 504 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 FAHD1Q6P587 224 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 COL1A1P02452 1464 aaPredicted RBP11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 IGKV3OR2-268A0A0C4DH90 116 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 PDCD6O75340 191 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 TMEM50AO95807 157 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 DNASE2BQ8WZ79 361 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 TEX37Q96LM6 180 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 ZDHHC8Q9ULC8 765 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 DAPP1Q9UN19 280 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 CYB5R3P00387 301 aaPredicted RBP11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 CTSDP07339 412 aaPredicted RBP11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 PPICP45877 212 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 DEFB109BQ30KR1 87 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 FAM27D1Q5T7N8 215 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 WSB2Q9NYS7 404 aaPredicted RBP11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 CEACAM16Q2WEN9 425 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 GPR82Q96P67 336 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 GPR27Q9NS67 375 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 IGKV3D-15A0A087WSY6 115 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 TRBV9A0A0B4J1U6 114 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 PRKNO60260 465 aaPredicted RBP11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 IGKV3-15P01624 115 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 MS4A6EQ96DS6 147 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 CXXC4Q9H2H0 198 aa11.8□□□□□ -0.52
CCDC88A-204ENST00000413716 A0A1W2PS18 150 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 CHST1O43916 411 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 OTX1P32242 354 aaPredicted RBP11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 POLR2GP62487 172 aaKnown RBP eCLIP11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 H1FOOQ8IZA3 346 aaPredicted RBP11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 METTL1Q9UBP6 276 aaKnown RBP11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 WIPI2Q9Y4P8 454 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 TMEM56-RWDD3S4R434 201 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 FGF5P12034 268 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 NTHL1P78549 312 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 ZNF56Q15929 161 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 STPG3Q8N7X2 389 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 OR6X1Q8NH79 312 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 NUDT8Q8WV74 236 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 ASB16Q96NS5 453 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 AURKAIP1Q9NWT8 199 aaPredicted RBP11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 ERGP11308 486 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 MAVSQ7Z434 540 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 BCL2P10415 239 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 RTN4RL1Q86UN2 441 aaPredicted RBP11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 OR4A5Q8NH83 315 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 C16orf52Q8NHV5 167 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 PRDM14Q9GZV8 571 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 OR51M1Q9H341 326 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 CLN8Q9UBY8 286 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 NEU3Q9UQ49 428 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 APELAP0DMC3 54 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 NPPBP16860 134 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 SURF2Q15527 256 aaPredicted RBP11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 CLLU1OSQ5K130 101 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 RFESDQ8TAC1 157 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 PHF3Q92576 2039 aaKnown RBP11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 PSG6Q00889 435 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 DMRTC1Q5HYR2 192 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 ASCL4Q6XD76 172 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 CLDN16Q9Y5I7 305 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 DOCK3Q8IZD9 2030 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 FZD5Q13467 585 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 CYB561D1Q8N8Q1 229 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 PDXPQ96GD0 296 aa11.79□□□□□ -0.52
CCDC88A-204ENST00000413716 LRRK1Q38SD2 2015 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 ZNF414Q96IQ9 312 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 NEU1Q99519 415 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 OR51B2Q9Y5P1 312 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 OLIG3Q7RTU3 272 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 PGLYRP4Q96LB8 373 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 MRPL18Q9H0U6 180 aaKnown RBP11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 HMX2A2RU54 273 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 CDKN2AP42771 156 aaKnown RBP11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 SRSF4Q08170 494 aaKnown RBP11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 ZNF562Q6V9R5 426 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 HARBI1Q96MB7 349 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 MGST2Q99735 147 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 SNED1Q8TER0 1413 aa11.78□□□□□ -0.52
CCDC88A-204ENST00000413716 SBK3P0C264 359 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms