RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 CD99P14209 185 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 FOSL1P15407 271 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 HNF4GQ14541 408 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 AKIRIN2Q53H80 203 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 PLCXD3Q63HM9 321 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 SPNS3Q6ZMD2 512 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 MEX3BQ6ZN04 569 aaKnown RBP4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 CALHM1Q8IU99 346 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 ZNF525Q8N782 197 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 ZNF383Q8NA42 475 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 ZBTB34Q8NCN2 500 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 OR2AE1Q8NHA4 323 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 MRPL30Q8TCC3 161 aaKnown RBP4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 ABHD14AQ9BUJ0 271 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 MRPL37Q9BZE1 423 aaKnown RBP4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 CRLF2Q9HC73 371 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 ZNF581Q9P0T4 197 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 OR14J1Q9UGF5 321 aa4.9□□□□□ -1.62
CCDC88A-203ENST00000412148 TGIF2-C20orf24A0A0A6YYL0 155 aa4.9□□□□□ -1.63
CCDC88A-203ENST00000412148 IGKV1-6A0A0C4DH72 117 aa4.9□□□□□ -1.63
CCDC88A-203ENST00000412148 A0A1W2PQM1 296 aa4.9□□□□□ -1.63
CCDC88A-203ENST00000412148 ARGFXA6NJG6 315 aa4.9□□□□□ -1.63
CCDC88A-203ENST00000412148 OR5B21A6NL26 309 aa4.9□□□□□ -1.63
CCDC88A-203ENST00000412148 CYB5BO43169 146 aa4.9□□□□□ -1.63
CCDC88A-203ENST00000412148 MBP02144 154 aa4.9□□□□□ -1.63
CCDC88A-203ENST00000412148 TRGC2P03986 189 aa4.9□□□□□ -1.63
CCDC88A-203ENST00000412148 CCL3P10147 92 aa4.9□□□□□ -1.63
CCDC88A-203ENST00000412148 EPHA8P29322 1005 aaPredicted RBP4.9□□□□□ -1.63
CCDC88A-203ENST00000412148 SSX2Q16385 188 aa4.9□□□□□ -1.63
CCDC88A-203ENST00000412148 VWC2Q2TAL6 325 aa4.9□□□□□ -1.63
CCDC88A-203ENST00000412148 RAET1LQ5VY80 246 aa4.9□□□□□ -1.63
CCDC88A-203ENST00000412148 AAED1Q7RTV5 226 aa4.9□□□□□ -1.63
CCDC88A-203ENST00000412148 SPEM1Q8N4L4 309 aa4.9□□□□□ -1.63
CCDC88A-203ENST00000412148 AGBL5Q8NDL9 886 aa4.9□□□□□ -1.63
CCDC88A-203ENST00000412148 OR10A7Q8NGE5 316 aa4.9□□□□□ -1.63
CCDC88A-203ENST00000412148 FRZBQ92765 325 aa4.9□□□□□ -1.63
CCDC88A-203ENST00000412148 ZNF837Q96EG3 531 aaPredicted RBP4.9□□□□□ -1.63
CCDC88A-203ENST00000412148 DIRC2Q96SL1 478 aa4.9□□□□□ -1.63
CCDC88A-203ENST00000412148 MAGT1Q9H0U3 335 aa4.9□□□□□ -1.63
CCDC88A-203ENST00000412148 MANBALQ9NQG1 85 aa4.9□□□□□ -1.63
CCDC88A-203ENST00000412148 RPRMQ9NS64 109 aa4.9□□□□□ -1.63
CCDC88A-203ENST00000412148 CA14Q9ULX7 337 aa4.9□□□□□ -1.63
CCDC88A-203ENST00000412148 TP53TG5Q9Y2B4 290 aa4.9□□□□□ -1.63
CCDC88A-203ENST00000412148 MPC1Q9Y5U8 109 aa4.9□□□□□ -1.63
CCDC88A-203ENST00000412148 ARID1BQ8NFD5 2236 aaPredicted RBP4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 IGKV1D-13A0A0B4J2D9 117 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 ZNF727A8MUV8 499 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 SYNGR2O43760 224 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 KLF7O75840 302 aaPredicted RBP4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 KBTBD11O94819 623 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 UMODP07911 640 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 P0C879 139 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 IGKV1-13P0DP09 117 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 MDKP21741 143 aaPredicted RBP4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 FGF7P21781 194 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 DDTP30046 118 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 FAM3BP58499 235 aaPredicted RBP4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 TAS2R60P59551 318 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 BPIFB3P59826 476 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 LCN2P80188 198 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 ZNF787Q6DD87 383 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 OR2T2Q6IF00 324 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 ZDHHC23Q8IYP9 409 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 SCGB1C1Q8TD33 95 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 APOBEC3DQ96AK3 386 aaPredicted RBP4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 CLDN23Q96B33 292 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 GPR146Q96CH1 333 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 CCDC74BQ96LY2 380 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 HIST1H2BLQ99880 126 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 WDR61Q9GZS3 305 aaKnown RBP4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 PCSK5Q92824 1860 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 SHANK1Q9Y566 2161 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 ABCA7Q8IZY2 2146 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 RNF212BA8MTL3 300 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 GGCTO75223 188 aaKnown RBP4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 OR7C1O76099 320 aaPredicted RBP4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 SERPINA7P05543 415 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 HOXA6P31267 233 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 NTF4P34130 210 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 SRP14P37108 136 aaKnown RBP4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 CARD18P57730 90 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 ZNF154Q13106 437 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 ZNF726P1Q15940 193 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 ZNF343Q6P1L6 599 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 TMEM14EPQ6UXP3 125 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 OR51G1Q8NGK1 321 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 OR10D4PQ8NGN7 298 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 OR2Y1Q8NGV0 311 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 TMEM170AQ8WVE7 144 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 TXNDC17Q9BRA2 123 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 PHF7Q9BWX1 381 aaPredicted RBP4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 LIN7CQ9NUP9 197 aaKnown RBP4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 PTPRBP23467 1997 aa4.89□□□□□ -1.63
CCDC88A-203ENST00000412148 SPAG17Q6Q759 2223 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 SMCO3A2RU48 225 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 PPP5D1E7EU14 171 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 SLC31A2O15432 143 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 IGLV2-14P01704 120 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 SCTP09683 121 aa4.88□□□□□ -1.63
CCDC88A-203ENST00000412148 BCL3P20749 454 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms