RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 GOSR1O95249 250 aa11.39□□□□□ -0.59
COL6A3-206ENST00000409809 ERGP11308 486 aa11.39□□□□□ -0.59
COL6A3-206ENST00000409809 PRRX1P54821 245 aa11.39□□□□□ -0.59
COL6A3-206ENST00000409809 WDR25Q64LD2 544 aaPredicted RBP11.39□□□□□ -0.59
COL6A3-206ENST00000409809 OR2A7Q96R45 310 aa11.39□□□□□ -0.59
COL6A3-206ENST00000409809 ELOVL5Q9NYP7 299 aa11.39□□□□□ -0.59
COL6A3-206ENST00000409809 KBTBD11O94819 623 aa11.39□□□□□ -0.59
COL6A3-206ENST00000409809 SNAI1O95863 264 aaPredicted RBP11.39□□□□□ -0.59
COL6A3-206ENST00000409809 LSM6P62312 80 aaKnown RBP11.39□□□□□ -0.59
COL6A3-206ENST00000409809 KLRB1Q12918 225 aa11.39□□□□□ -0.59
COL6A3-206ENST00000409809 R3HDM4Q96D70 268 aa11.39□□□□□ -0.59
COL6A3-206ENST00000409809 RCC1P18754 421 aaPredicted RBP11.39□□□□□ -0.59
COL6A3-206ENST00000409809 CEACAM3P40198 252 aa11.39□□□□□ -0.59
COL6A3-206ENST00000409809 CD74P04233 296 aa11.39□□□□□ -0.59
COL6A3-206ENST00000409809 FTH1P19P0C7X4 201 aa11.39□□□□□ -0.59
COL6A3-206ENST00000409809 YRDCQ86U90 279 aaKnown RBP11.39□□□□□ -0.59
COL6A3-206ENST00000409809 MRGPRX1Q96LB2 322 aa11.39□□□□□ -0.59
COL6A3-206ENST00000409809 PARLQ9H300 379 aa11.39□□□□□ -0.59
COL6A3-206ENST00000409809 WNT16Q9UBV4 365 aa11.39□□□□□ -0.59
COL6A3-206ENST00000409809 IQCF3P0C7M6 154 aa11.39□□□□□ -0.59
COL6A3-206ENST00000409809 RAC3P60763 192 aa11.39□□□□□ -0.59
COL6A3-206ENST00000409809 FAM71F2Q6NXP2 309 aa11.39□□□□□ -0.59
COL6A3-206ENST00000409809 HOGA1Q86XE5 327 aa11.39□□□□□ -0.59
COL6A3-206ENST00000409809 ZNF665Q9H7R5 613 aa11.39□□□□□ -0.59
COL6A3-206ENST00000409809 PAGE4O60829 102 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 MVDP53602 400 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 WTIPA6NIX2 430 aaPredicted RBP11.38□□□□□ -0.59
COL6A3-206ENST00000409809 CA1P00915 261 aaPredicted RBP11.38□□□□□ -0.59
COL6A3-206ENST00000409809 LGALS3P17931 250 aaKnown RBP11.38□□□□□ -0.59
COL6A3-206ENST00000409809 A0A1B0GWB2 263 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 SFTPCP11686 197 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 ZXDAP98168 799 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 SLC26A1Q9H2B4 701 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 TCFL5Q9UL49 500 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 SPCS1Q9Y6A9 102 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 ZNF414Q96IQ9 312 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 MFRPQ9BY79 579 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 MYOZ1Q9NP98 299 aaPredicted RBP11.38□□□□□ -0.59
COL6A3-206ENST00000409809 TINAGQ9UJW2 476 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 PIAS3Q9Y6X2 628 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 QSER1Q2KHR3 1735 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 OR11H12B2RN74 326 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 OR11H1Q8NG94 326 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 OR1B1Q8NGR6 318 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 OR11H2Q8NH07 326 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 BAHD1Q8TBE0 780 aaPredicted RBP11.38□□□□□ -0.59
COL6A3-206ENST00000409809 ORAOV1Q8WV07 137 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 RASL11BQ9BPW5 248 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 PCGF1Q9BSM1 259 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 CYSLTR1Q9Y271 337 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 CDX4O14627 284 aaPredicted RBP11.38□□□□□ -0.59
COL6A3-206ENST00000409809 HPRT1P00492 218 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 GGTLC2Q14390 218 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 TSPAN32Q96QS1 320 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 SFXN3Q9BWM7 321 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 ZGRF1Q86YA3 2104 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 CKS2P33552 79 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 C9orf135Q5VTT2 229 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 C2orf88Q9BSF0 95 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 AICDAQ9GZX7 198 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 ST20Q9HBF5 79 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 HSF4Q9ULV5 492 aa11.38□□□□□ -0.59
COL6A3-206ENST00000409809 MOGAT3Q86VF5 341 aa11.37□□□□□ -0.59
COL6A3-206ENST00000409809 SIPA1L3O60292 1781 aaPredicted RBP11.37□□□□□ -0.59
COL6A3-206ENST00000409809 MOSPD3O75425 235 aa11.37□□□□□ -0.59
COL6A3-206ENST00000409809 ATP5LO75964 103 aa11.37□□□□□ -0.59
COL6A3-206ENST00000409809 HOXA5P20719 270 aa11.37□□□□□ -0.59
COL6A3-206ENST00000409809 FBLN7Q53RD9 439 aa11.37□□□□□ -0.59
COL6A3-206ENST00000409809 FBXO17Q96EF6 278 aa11.37□□□□□ -0.59
COL6A3-206ENST00000409809 TNFSF15O95150 251 aa11.37□□□□□ -0.59
COL6A3-206ENST00000409809 ERV3-1Q14264 604 aa11.37□□□□□ -0.59
COL6A3-206ENST00000409809 FAM181AQ8N9Y4 354 aa11.37□□□□□ -0.59
COL6A3-206ENST00000409809 LAMTOR2Q9Y2Q5 125 aa11.37□□□□□ -0.59
COL6A3-206ENST00000409809 NPIPB6E9PJ23 425 aa11.37□□□□□ -0.59
COL6A3-206ENST00000409809 OR4P4Q8NGL7 312 aa11.37□□□□□ -0.59
COL6A3-206ENST00000409809 C16orf52Q8NHV5 167 aa11.37□□□□□ -0.59
COL6A3-206ENST00000409809 SPACA5Q96QH8 159 aa11.37□□□□□ -0.59
COL6A3-206ENST00000409809 SHANK1Q9Y566 2161 aa11.37□□□□□ -0.59
COL6A3-206ENST00000409809 LINC01549A6NIU2 74 aa11.37□□□□□ -0.59
COL6A3-206ENST00000409809 CRYAAP02489 173 aa11.37□□□□□ -0.59
COL6A3-206ENST00000409809 RBP4P02753 201 aa11.37□□□□□ -0.59
COL6A3-206ENST00000409809 ZNF865P0CJ78 1059 aaPredicted RBP11.37□□□□□ -0.59
COL6A3-206ENST00000409809 NUP37Q8NFH4 326 aa11.37□□□□□ -0.59
COL6A3-206ENST00000409809 WSB2Q9NYS7 404 aaPredicted RBP11.37□□□□□ -0.59
COL6A3-206ENST00000409809 TRGC1P0CF51 173 aa11.37□□□□□ -0.59
COL6A3-206ENST00000409809 LRRC75AQ8NAA5 344 aa11.37□□□□□ -0.59
COL6A3-206ENST00000409809 GALNT14Q96FL9 552 aa11.37□□□□□ -0.59
COL6A3-206ENST00000409809 SPTAN1Q13813 2472 aaKnown RBP11.37□□□□□ -0.59
COL6A3-206ENST00000409809 C17orf51A8MQB3 221 aa11.37□□□□□ -0.59
COL6A3-206ENST00000409809 CD40P25942 277 aa11.37□□□□□ -0.59
COL6A3-206ENST00000409809 NPVFQ9HCQ7 196 aa11.37□□□□□ -0.59
COL6A3-206ENST00000409809 LTB4R2Q9NPC1 389 aa11.37□□□□□ -0.59
COL6A3-206ENST00000409809 hADV38S2A0JD32 116 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 DSCR4P56555 118 aaPredicted RBP11.36□□□□□ -0.59
COL6A3-206ENST00000409809 TMEM50BP56557 158 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 FADS6Q8N9I5 356 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 OR10D3Q8NH80 312 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 TMEM40Q8WWA1 233 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 TMEM242Q9NWH2 141 aa11.36□□□□□ -0.59
COL6A3-206ENST00000409809 TIMP1P01033 207 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms