RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 ADAM30Q9UKF2 790 aa7.53□□□□□ -1.2
VPS53-203ENST00000401468 UBE2J1Q9Y385 318 aaPredicted RBP7.53□□□□□ -1.2
VPS53-203ENST00000401468 NBEAL2Q6ZNJ1 2754 aa7.52□□□□□ -1.21
VPS53-203ENST00000401468 hADV38S2A0JD32 116 aa7.52□□□□□ -1.21
VPS53-203ENST00000401468 TMEM30CPA0ZSE6 113 aa7.52□□□□□ -1.21
VPS53-203ENST00000401468 NPIPB11E5RHQ5 1161 aa7.52□□□□□ -1.21
VPS53-203ENST00000401468 J3QLI3 93 aa7.52□□□□□ -1.21
VPS53-203ENST00000401468 M0R1W7 72 aa7.52□□□□□ -1.21
VPS53-203ENST00000401468 HLA-DQB1P01920 261 aa7.52□□□□□ -1.21
VPS53-203ENST00000401468 IGHV4-38-2P0DP08 117 aa7.52□□□□□ -1.21
VPS53-203ENST00000401468 GNB3P16520 340 aa7.52□□□□□ -1.21
VPS53-203ENST00000401468 NDUFB7P17568 137 aa7.52□□□□□ -1.21
VPS53-203ENST00000401468 ETV6P41212 452 aa7.52□□□□□ -1.21
VPS53-203ENST00000401468 SCN1BQ07699 218 aa7.52□□□□□ -1.21
VPS53-203ENST00000401468 ZNF273Q14593 569 aa7.52□□□□□ -1.21
VPS53-203ENST00000401468 KRBOX4Q5JUW0 171 aa7.52□□□□□ -1.21
VPS53-203ENST00000401468 OLFML2AQ68BL7 652 aa7.52□□□□□ -1.21
VPS53-203ENST00000401468 Q8N7P7 452 aa7.52□□□□□ -1.21
VPS53-203ENST00000401468 ZDHHC22Q8N966 263 aa7.52□□□□□ -1.21
VPS53-203ENST00000401468 MRPL30Q8TCC3 161 aaKnown RBP7.52□□□□□ -1.21
VPS53-203ENST00000401468 ZNF418Q8TF45 676 aaPredicted RBP7.52□□□□□ -1.21
VPS53-203ENST00000401468 GCDHQ92947 438 aaPredicted RBP7.52□□□□□ -1.21
VPS53-203ENST00000401468 MISP3Q96FF7 219 aa7.52□□□□□ -1.21
VPS53-203ENST00000401468 ZNF48Q96MX3 618 aaPredicted RBP7.52□□□□□ -1.21
VPS53-203ENST00000401468 SIRPDQ9H106 197 aa7.52□□□□□ -1.21
VPS53-203ENST00000401468 C12orf4Q9NQ89 552 aa7.52□□□□□ -1.21
VPS53-203ENST00000401468 DIABLOQ9NR28 239 aa7.52□□□□□ -1.21
VPS53-203ENST00000401468 ETAA1Q9NY74 926 aa7.52□□□□□ -1.21
VPS53-203ENST00000401468 TAS2R3Q9NYW6 316 aa7.52□□□□□ -1.21
VPS53-203ENST00000401468 PTTG2Q9NZH5 202 aa7.52□□□□□ -1.21
VPS53-203ENST00000401468 OR6C3Q9NZP0 311 aa7.52□□□□□ -1.21
VPS53-203ENST00000401468 RABL2AQ9UBK7 228 aaPredicted RBP7.52□□□□□ -1.21
VPS53-203ENST00000401468 KIF25Q9UIL4 384 aa7.52□□□□□ -1.21
VPS53-203ENST00000401468 ANAPC10Q9UM13 185 aa7.52□□□□□ -1.21
VPS53-203ENST00000401468 RABL2BQ9UNT1 228 aa7.52□□□□□ -1.21
VPS53-203ENST00000401468 KPTNQ9Y664 436 aa7.52□□□□□ -1.21
VPS53-203ENST00000401468 UBE2QL1A1L167 161 aa7.51□□□□□ -1.21
VPS53-203ENST00000401468 ZNF729A6NN14 1252 aaPredicted RBP7.51□□□□□ -1.21
VPS53-203ENST00000401468 C15orf65H3BRN8 121 aa7.51□□□□□ -1.21
VPS53-203ENST00000401468 HSPB6O14558 160 aa7.51□□□□□ -1.21
VPS53-203ENST00000401468 ORC5O43913 435 aa7.51□□□□□ -1.21
VPS53-203ENST00000401468 SSX5O60225 188 aa7.51□□□□□ -1.21
VPS53-203ENST00000401468 CLPXO76031 633 aa7.51□□□□□ -1.21
VPS53-203ENST00000401468 DIRAS3O95661 229 aa7.51□□□□□ -1.21
VPS53-203ENST00000401468 OMGP23515 440 aa7.51□□□□□ -1.21
VPS53-203ENST00000401468 DTYMKP23919 212 aa7.51□□□□□ -1.21
VPS53-203ENST00000401468 TNFSF8P32971 234 aa7.51□□□□□ -1.21
VPS53-203ENST00000401468 DLX1P56177 255 aa7.51□□□□□ -1.21
VPS53-203ENST00000401468 PITPNAQ00169 270 aa7.51□□□□□ -1.21
VPS53-203ENST00000401468 C17orf58Q2M2W7 97 aa7.51□□□□□ -1.21
VPS53-203ENST00000401468 CDNFQ49AH0 187 aa7.51□□□□□ -1.21
VPS53-203ENST00000401468 RUSC1-AS1Q66K80 236 aa7.51□□□□□ -1.21
VPS53-203ENST00000401468 TRAT1Q6PIZ9 186 aa7.51□□□□□ -1.21
VPS53-203ENST00000401468 BAIAP2L2Q6UXY1 529 aa7.51□□□□□ -1.21
VPS53-203ENST00000401468 BRD3OSQ6XYD6 125 aa7.51□□□□□ -1.21
VPS53-203ENST00000401468 CCDC190Q86UF4 302 aa7.51□□□□□ -1.21
VPS53-203ENST00000401468 PDZD9Q8IXQ8 264 aa7.51□□□□□ -1.21
VPS53-203ENST00000401468 OR4M1Q8NGD0 313 aa7.51□□□□□ -1.21
VPS53-203ENST00000401468 OR10A7Q8NGE5 316 aa7.51□□□□□ -1.21
VPS53-203ENST00000401468 OR6Q1Q8NGQ2 317 aa7.51□□□□□ -1.21
VPS53-203ENST00000401468 NANPQ8TBE9 248 aa7.51□□□□□ -1.21
VPS53-203ENST00000401468 AUNIPQ9H7T9 357 aa7.51□□□□□ -1.21
VPS53-203ENST00000401468 MGAT4AQ9UM21 535 aa7.51□□□□□ -1.21
VPS53-203ENST00000401468 TRAV18A0A075B6X5 111 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 MEIKINA0A087WXM9 373 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 A0A087X0M5 115 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 TRAV40A0A0B4J280 105 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 KRTAP4-8A0A0G2JLE6 195 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 KBTBD11-OT1A0A1B0GTJ5 212 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 A0A1B0GX30 115 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 A0A1W2PPH5 198 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 DNAJC9-AS1A6NH13 148 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 F2RL2O00254 374 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 CTDSPLO15194 276 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 FSHBP01225 129 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 FCGR3AP08637 254 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 ZNF728P0DKX0 622 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 GZMHP20718 246 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 PTBP1P26599 531 aaKnown RBP eCLIP7.5□□□□□ -1.214e-7■■■■■ 29.2
VPS53-203ENST00000401468 CD34P28906 385 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 EDDM3BP56851 147 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 TAS2R20P59543 309 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 HILS1P60008 231 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 EDDM3AQ14507 147 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 HMGN3Q15651 99 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 TMEM30BQ3MIR4 351 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 TMEM69Q5SWH9 247 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 CNIH2Q6PI25 160 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 HEPN1Q6WQI6 88 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 MOB1BQ7L9L4 216 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 TPRX1Q8N7U7 411 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 ZNF565Q8N9K5 539 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 OR13A1Q8NGR1 328 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 C15orf40Q8WUR7 153 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 H1FXQ92522 213 aaKnown RBP7.5□□□□□ -1.21
VPS53-203ENST00000401468 TNFRSF14Q92956 283 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 UPRTQ96BW1 309 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 ZNF714Q96N38 554 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 ABHD1Q96SE0 405 aa7.5□□□□□ -1.21
VPS53-203ENST00000401468 CMSS1Q9BQ75 279 aaKnown RBP7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms