RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 VSIG4Q9Y279 399 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 GAGE12BA1L429 117 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 PLNP26678 52 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 GNG3P63215 75 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 SPEM2Q0P670 501 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 BIVMQ86UB2 503 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 SLC25A15Q9Y619 301 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 TRAV8-6A0A0B4J262 113 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 MED19A0JLT2 244 aaPredicted RBP7.73□□□□□ -1.17
LIG3-202ENST00000378526 CDIPTO14735 213 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 PRKNO60260 465 aaPredicted RBP7.73□□□□□ -1.17
LIG3-202ENST00000378526 LINC00596Q86U02 117 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 NUDT8Q8WV74 236 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 APOBEC3DQ96AK3 386 aaPredicted RBP7.73□□□□□ -1.17
LIG3-202ENST00000378526 MMP25Q9NPA2 562 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 ERRFI1Q9UJM3 462 aaPredicted RBP7.73□□□□□ -1.17
LIG3-202ENST00000378526 TDRD15B5MCY1 1934 aaKnown RBP7.73□□□□□ -1.17
LIG3-202ENST00000378526 FAM72CH0Y354 149 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 CFDP00746 253 aaPredicted RBP7.73□□□□□ -1.17
LIG3-202ENST00000378526 KISS1Q15726 138 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 TMEM155Q4W5P6 130 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 FAM72AQ5TYM5 149 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 FAM72DQ6L9T8 149 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 MOB3BQ86TA1 216 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 FAM72BQ86X60 149 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 OR5AN1Q8NGI8 311 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 ASB10Q8WXI3 467 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 G6PC2Q9NQR9 355 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 STARD5Q9NSY2 213 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 ZNF346Q9UL40 294 aaKnown RBP7.73□□□□□ -1.17
LIG3-202ENST00000378526 C4AP0C0L4 1744 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 C4BP0C0L5 1744 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 B3GALT4O96024 378 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 NHLRC3Q5JS37 347 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 SELENOHQ8IZQ5 122 aaKnown RBP7.73□□□□□ -1.17
LIG3-202ENST00000378526 IL17CQ9P0M4 197 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 ZNF840PA6NDX5 716 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 GDF9O60383 454 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 CAPZBP47756 277 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 TRAV2A0A0B4J234 112 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 FCGR3BO75015 233 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 ETHE1O95571 254 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 HIST1H4AP62805 103 aaKnown RBP7.73□□□□□ -1.17
LIG3-202ENST00000378526 CFAP161Q6P656 301 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 OR9G4Q8NGQ1 327 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 SLC6A13Q9NSD5 602 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 TUBD1Q9UJT1 453 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 APC2O95996 2303 aa7.73□□□□□ -1.17
LIG3-202ENST00000378526 ZNF407Q9C0G0 2248 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 C7orf66A4D0T2 115 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 ASPDHA6ND91 283 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 SS18L1O75177 396 aaPredicted RBP7.72□□□□□ -1.17
LIG3-202ENST00000378526 ERVK11-1P61568 191 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 TSPO2Q5TGU0 170 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 OTOSQ8NHW6 89 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 MS4A8Q9BY19 250 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 FAM157AC9JC47 383 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 HMGN4O00479 90 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 NDUFB4O95168 129 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 PSG2P11465 335 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 GLULP15104 373 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 OTX1P32242 354 aaPredicted RBP7.72□□□□□ -1.17
LIG3-202ENST00000378526 CADM4Q8NFZ8 388 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 OR13H1Q8NG92 308 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 HES7Q9BYE0 225 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 PLEKHB1Q9UF11 243 aaPredicted RBP7.72□□□□□ -1.17
LIG3-202ENST00000378526 CARHSP1Q9Y2V2 147 aaKnown RBP7.72□□□□□ -1.17
LIG3-202ENST00000378526 V9GYH0 126 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 A0A0A6YYC8 382 aaPredicted RBP7.72□□□□□ -1.17
LIG3-202ENST00000378526 I3L1I5 382 aaPredicted RBP7.72□□□□□ -1.17
LIG3-202ENST00000378526 ZNF865P0CJ78 1059 aaPredicted RBP7.72□□□□□ -1.17
LIG3-202ENST00000378526 PQLC2Q6ZP29 291 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 ZNF683Q8IZ20 524 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 TM4SF18Q96CE8 201 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 WNT10AQ9GZT5 417 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 LAT2Q9GZY6 243 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 TLNRD1Q9H1K6 362 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 SP9P0CG40 484 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 RPS4XP62701 263 aaKnown RBP7.72□□□□□ -1.17
LIG3-202ENST00000378526 HIKESHIQ53FT3 197 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 TMEM178AQ8NBL3 297 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.72□□□□□ -1.17
LIG3-202ENST00000378526 CNTFRP26992 372 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 NFAM1Q8NET5 270 aaPredicted RBP7.72□□□□□ -1.17
LIG3-202ENST00000378526 ZBTB32Q9Y2Y4 487 aaPredicted RBP7.72□□□□□ -1.17
LIG3-202ENST00000378526 WNT6Q9Y6F9 365 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 TRAV9-2A0A087WT02 112 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 PDCD6O75340 191 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 IGHV4-39P01824 125 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 MVDP53602 400 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 RPL18Q07020 188 aaKnown RBP7.72□□□□□ -1.17
LIG3-202ENST00000378526 ABHD17CQ6PCB6 329 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 OSTM1Q86WC4 334 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 LMO3Q8TAP4 145 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 ZNF775Q96BV0 537 aaPredicted RBP7.72□□□□□ -1.17
LIG3-202ENST00000378526 DSPPQ9NZW4 1301 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 SELENOTP62341 195 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 FKBP1BP68106 108 aa7.72□□□□□ -1.17
LIG3-202ENST00000378526 RAE1P78406 368 aaKnown RBP7.72□□□□□ -1.17
LIG3-202ENST00000378526 ZNF585BQ52M93 769 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms