RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 WSB1Q9Y6I7 421 aa10.71□□□□□ -0.69
VPS29-201ENST00000360579 TRAV39A0A0B4J263 110 aa10.7□□□□□ -0.7
VPS29-201ENST00000360579 TRAV41A0A0B4J266 112 aa10.7□□□□□ -0.7
VPS29-201ENST00000360579 TCRBV3S1A0A5B6 114 aa10.7□□□□□ -0.7
VPS29-201ENST00000360579 G3V318 75 aa10.7□□□□□ -0.7
VPS29-201ENST00000360579 C15orf65H3BRN8 121 aa10.7□□□□□ -0.7
VPS29-201ENST00000360579 IFNA6P05013 189 aa10.7□□□□□ -0.7
VPS29-201ENST00000360579 SLC2A2P11168 524 aaPredicted RBP10.7□□□□□ -0.7
VPS29-201ENST00000360579 MYF6P23409 242 aa10.7□□□□□ -0.7
VPS29-201ENST00000360579 PITPNAQ00169 270 aa10.7□□□□□ -0.7
VPS29-201ENST00000360579 RSU1Q15404 277 aa10.7□□□□□ -0.7
VPS29-201ENST00000360579 ZSCAN26Q16670 478 aa10.7□□□□□ -0.7
VPS29-201ENST00000360579 TMEM30BQ3MIR4 351 aa10.7□□□□□ -0.7
VPS29-201ENST00000360579 PIGYQ3MUY2 71 aa10.7□□□□□ -0.7
VPS29-201ENST00000360579 KDM4DQ6B0I6 523 aa10.7□□□□□ -0.7
VPS29-201ENST00000360579 SLC25A48Q6ZT89 311 aaKnown RBP10.7□□□□□ -0.7
VPS29-201ENST00000360579 LINC00528Q8N1L1 170 aa10.7□□□□□ -0.7
VPS29-201ENST00000360579 SUMF2Q8NBJ7 301 aa10.7□□□□□ -0.7
VPS29-201ENST00000360579 IL17DQ8TAD2 202 aa10.7□□□□□ -0.7
VPS29-201ENST00000360579 TNFAIP8L1Q8WVP5 186 aa10.7□□□□□ -0.7
VPS29-201ENST00000360579 MYCBPQ99417 103 aaPredicted RBP10.7□□□□□ -0.7
VPS29-201ENST00000360579 GPER1Q99527 375 aa10.7□□□□□ -0.7
VPS29-201ENST00000360579 PARP11Q9NR21 331 aa10.7□□□□□ -0.7
VPS29-201ENST00000360579 ERGIC3Q9Y282 383 aa10.7□□□□□ -0.7
VPS29-201ENST00000360579 ALMS1Q8TCU4 4167 aa10.69□□□□□ -0.7
VPS29-201ENST00000360579 DAPL1A0PJW8 107 aa10.69□□□□□ -0.7
VPS29-201ENST00000360579 MAGEA13PA6NCF6 341 aa10.69□□□□□ -0.7
VPS29-201ENST00000360579 OR4C45A6NMZ5 311 aa10.69□□□□□ -0.7
VPS29-201ENST00000360579 G3V2T6 193 aa10.69□□□□□ -0.7
VPS29-201ENST00000360579 ARPC1BO15143 372 aaKnown RBP10.69□□□□□ -0.7
VPS29-201ENST00000360579 ATP6V0E1O15342 81 aa10.69□□□□□ -0.7
VPS29-201ENST00000360579 HSPA12AO43301 675 aa10.69□□□□□ -0.7
VPS29-201ENST00000360579 HLA-DRB1P01911 266 aa10.69□□□□□ -0.7
VPS29-201ENST00000360579 SLURP1P55000 103 aa10.69□□□□□ -0.7
VPS29-201ENST00000360579 FAM53AQ6NSI3 398 aaPredicted RBP10.69□□□□□ -0.7
VPS29-201ENST00000360579 LINC00596Q86U02 117 aa10.69□□□□□ -0.7
VPS29-201ENST00000360579 PARP16Q8N5Y8 322 aa10.69□□□□□ -0.7
VPS29-201ENST00000360579 ARPC1AQ92747 370 aa10.69□□□□□ -0.7
VPS29-201ENST00000360579 TOLLIPQ9H0E2 274 aa10.69□□□□□ -0.7
VPS29-201ENST00000360579 C19orf73Q9NVV2 129 aa10.69□□□□□ -0.7
VPS29-201ENST00000360579 ST3GAL6Q9Y274 331 aa10.69□□□□□ -0.7
VPS29-201ENST00000360579 SPINT2O43291 252 aa10.68□□□□□ -0.7
VPS29-201ENST00000360579 OR7C1O76099 320 aaPredicted RBP10.68□□□□□ -0.7
VPS29-201ENST00000360579 CSTBP04080 98 aaKnown RBP10.68□□□□□ -0.7
VPS29-201ENST00000360579 LGALS1P09382 135 aaKnown RBP10.68□□□□□ -0.7
VPS29-201ENST00000360579 T-ENOLP0DO92 83 aa10.68□□□□□ -0.7
VPS29-201ENST00000360579 RAB3AP20336 220 aa10.68□□□□□ -0.7
VPS29-201ENST00000360579 VHLP40337 213 aa10.68□□□□□ -0.7
VPS29-201ENST00000360579 GNGT1P63211 74 aa10.68□□□□□ -0.7
VPS29-201ENST00000360579 LSAMPQ13449 338 aa10.68□□□□□ -0.7
VPS29-201ENST00000360579 ALKBH1Q13686 389 aaKnown RBP10.68□□□□□ -0.7
VPS29-201ENST00000360579 NHLRC3Q5JS37 347 aa10.68□□□□□ -0.7
VPS29-201ENST00000360579 STEAP3Q658P3 488 aa10.68□□□□□ -0.7
VPS29-201ENST00000360579 ZDHHC13Q8IUH4 622 aa10.68□□□□□ -0.7
VPS29-201ENST00000360579 MINDY2Q8NBR6 621 aa10.68□□□□□ -0.7
VPS29-201ENST00000360579 FLYWCH2Q96CP2 140 aaKnown RBP10.68□□□□□ -0.7
VPS29-201ENST00000360579 MRPL48Q96GC5 212 aaKnown RBP10.68□□□□□ -0.7
VPS29-201ENST00000360579 ZNF251Q9BRH9 671 aa10.68□□□□□ -0.7
VPS29-201ENST00000360579 ELOVL1Q9BW60 279 aa10.68□□□□□ -0.7
VPS29-201ENST00000360579 FAM192AQ9GZU8 254 aa10.68□□□□□ -0.7
VPS29-201ENST00000360579 GABARAPL1Q9H0R8 117 aa10.68□□□□□ -0.7
VPS29-201ENST00000360579 CST11Q9H112 138 aa10.68□□□□□ -0.7
VPS29-201ENST00000360579 RIBC2Q9H4K1 309 aa10.68□□□□□ -0.7
VPS29-201ENST00000360579 GNG12Q9UBI6 72 aa10.68□□□□□ -0.7
VPS29-201ENST00000360579 DHDHQ9UQ10 334 aa10.68□□□□□ -0.7
VPS29-201ENST00000360579 IGHV7-81A0A0B4J1V7 117 aa10.67□□□□□ -0.7
VPS29-201ENST00000360579 IGHV3-43A0A0B4J1X8 118 aa10.67□□□□□ -0.7
VPS29-201ENST00000360579 GABRPO00591 440 aa10.67□□□□□ -0.7
VPS29-201ENST00000360579 LANCL1O43813 399 aa10.67□□□□□ -0.7
VPS29-201ENST00000360579 HTR3BO95264 441 aa10.67□□□□□ -0.7
VPS29-201ENST00000360579 IGHV3-43DP0DP04 118 aa10.67□□□□□ -0.7
VPS29-201ENST00000360579 ACTBP60709 375 aa10.67□□□□□ -0.7
VPS29-201ENST00000360579 LPCAT4Q643R3 524 aa10.67□□□□□ -0.7
VPS29-201ENST00000360579 ASCL4Q6XD76 172 aa10.67□□□□□ -0.7
VPS29-201ENST00000360579 SATL1Q86VE3 508 aa10.67□□□□□ -0.7
VPS29-201ENST00000360579 Q8N1Y9 231 aa10.67□□□□□ -0.7
VPS29-201ENST00000360579 STX19Q8N4C7 294 aa10.67□□□□□ -0.7
VPS29-201ENST00000360579 TCTEX1D1Q8N7M0 179 aa10.67□□□□□ -0.7
VPS29-201ENST00000360579 ZNF439Q8NDP4 499 aa10.67□□□□□ -0.7
VPS29-201ENST00000360579 OR10K1Q8NGX5 313 aa10.67□□□□□ -0.7
VPS29-201ENST00000360579 CCDC107Q8WV48 283 aa10.67□□□□□ -0.7
VPS29-201ENST00000360579 PELI1Q96FA3 418 aa10.67□□□□□ -0.7
VPS29-201ENST00000360579 ALX4Q9H161 411 aaPredicted RBP10.67□□□□□ -0.7
VPS29-201ENST00000360579 STUB1Q9UNE7 303 aa10.67□□□□□ -0.7
VPS29-201ENST00000360579 TMEM212A6NML5 194 aa10.66□□□□□ -0.7
VPS29-201ENST00000360579 J3QLW9 94 aa10.66□□□□□ -0.7
VPS29-201ENST00000360579 J3QRE1 110 aa10.66□□□□□ -0.7
VPS29-201ENST00000360579 AIPO00170 330 aa10.66□□□□□ -0.7
VPS29-201ENST00000360579 SLC31A2O15432 143 aa10.66□□□□□ -0.7
VPS29-201ENST00000360579 NBR2O15453 112 aa10.66□□□□□ -0.7
VPS29-201ENST00000360579 HSPB1P04792 205 aaKnown RBP10.66□□□□□ -0.7
VPS29-201ENST00000360579 ZNF19P17023 458 aa10.66□□□□□ -0.7
VPS29-201ENST00000360579 BLVRBP30043 206 aaPredicted RBP10.66□□□□□ -0.7
VPS29-201ENST00000360579 RBM11P57052 281 aaKnown RBP10.66□□□□□ -0.7
VPS29-201ENST00000360579 MPV17LQ2QL34 196 aa10.66□□□□□ -0.7
VPS29-201ENST00000360579 CT45A1Q5HYN5 189 aa10.66□□□□□ -0.7
VPS29-201ENST00000360579 PYHIN1Q6K0P9 492 aa10.66□□□□□ -0.7
VPS29-201ENST00000360579 LIN54Q6MZP7 749 aa10.66□□□□□ -0.7
VPS29-201ENST00000360579 ZNF497Q6ZNH5 498 aa10.66□□□□□ -0.7
VPS29-201ENST00000360579 ANKRD13BQ86YJ7 626 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms