RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 LOXL2Q9Y4K0 774 aa17.07■□□□□ 0.32
CCDC88B-202ENST00000356786 LTBP1Q14766 1721 aa17.07■□□□□ 0.32
CCDC88B-202ENST00000356786 FCGR3AP08637 254 aa17.07■□□□□ 0.32
CCDC88B-202ENST00000356786 ASAH2BP0C7U1 165 aa17.07■□□□□ 0.32
CCDC88B-202ENST00000356786 D2HGDHQ8N465 521 aa17.07■□□□□ 0.32
CCDC88B-202ENST00000356786 OR4S2Q8NH73 311 aa17.07■□□□□ 0.32
CCDC88B-202ENST00000356786 TIMD4Q96H15 378 aa17.07■□□□□ 0.32
CCDC88B-202ENST00000356786 PMELP40967 661 aa17.06■□□□□ 0.32
CCDC88B-202ENST00000356786 RARRES2Q99969 163 aa17.06■□□□□ 0.32
CCDC88B-202ENST00000356786 MFRPQ9BY79 579 aa17.06■□□□□ 0.32
CCDC88B-202ENST00000356786 TNFSF14O43557 240 aa17.06■□□□□ 0.32
CCDC88B-202ENST00000356786 PDPNQ86YL7 162 aa17.06■□□□□ 0.32
CCDC88B-202ENST00000356786 GSN-AS1Q9NRJ2 163 aa17.06■□□□□ 0.32
CCDC88B-202ENST00000356786 CBLN4Q9NTU7 201 aa17.06■□□□□ 0.32
CCDC88B-202ENST00000356786 TRGC1P0CF51 173 aa17.06■□□□□ 0.32
CCDC88B-202ENST00000356786 C1orf100Q5SVJ3 147 aa17.06■□□□□ 0.32
CCDC88B-202ENST00000356786 A6NDN8 102 aa17.06■□□□□ 0.32
CCDC88B-202ENST00000356786 APCSP02743 223 aa17.06■□□□□ 0.32
CCDC88B-202ENST00000356786 BPIFA4PQ86YQ2 179 aa17.06■□□□□ 0.32
CCDC88B-202ENST00000356786 PTPMT1Q8WUK0 201 aaPredicted RBP17.06■□□□□ 0.32
CCDC88B-202ENST00000356786 LRRC29Q8WV35 223 aa17.06■□□□□ 0.32
CCDC88B-202ENST00000356786 TMEM204Q9BSN7 226 aa17.06■□□□□ 0.32
CCDC88B-202ENST00000356786 FZR1Q9UM11 496 aa17.06■□□□□ 0.32
CCDC88B-202ENST00000356786 ZNF785A8K8V0 405 aa17.05■□□□□ 0.32
CCDC88B-202ENST00000356786 FHITP49789 147 aa17.05■□□□□ 0.32
CCDC88B-202ENST00000356786 SLC35B1P78383 322 aa17.05■□□□□ 0.32
CCDC88B-202ENST00000356786 C19orf48Q6RUI8 117 aa17.05■□□□□ 0.32
CCDC88B-202ENST00000356786 TRBV5-7A0A0A0MS05 114 aa17.05■□□□□ 0.32
CCDC88B-202ENST00000356786 HINT1P49773 126 aaPredicted RBP17.05■□□□□ 0.32
CCDC88B-202ENST00000356786 EIF3IQ13347 325 aaKnown RBP17.05■□□□□ 0.32
CCDC88B-202ENST00000356786 RAB29O14966 203 aa17.05■□□□□ 0.32
CCDC88B-202ENST00000356786 CXorf66Q5JRM2 361 aaPredicted RBP17.05■□□□□ 0.32
CCDC88B-202ENST00000356786 WDFY1Q8IWB7 410 aa17.05■□□□□ 0.32
CCDC88B-202ENST00000356786 RNF2Q99496 336 aa17.05■□□□□ 0.32
CCDC88B-202ENST00000356786 IFITM10A6NMD0 228 aa17.04■□□□□ 0.32
CCDC88B-202ENST00000356786 CXorf1O96002 111 aa17.04■□□□□ 0.32
CCDC88B-202ENST00000356786 SRD5A2P31213 254 aa17.04■□□□□ 0.32
CCDC88B-202ENST00000356786 ROM1Q03395 351 aa17.04■□□□□ 0.32
CCDC88B-202ENST00000356786 REC114Q7Z4M0 266 aa17.04■□□□□ 0.32
CCDC88B-202ENST00000356786 PLA2G3Q9NZ20 509 aa17.04■□□□□ 0.32
CCDC88B-202ENST00000356786 SCN4AP35499 1836 aa17.04■□□□□ 0.32
CCDC88B-202ENST00000356786 FBLL1A6NHQ2 334 aaKnown RBP17.04■□□□□ 0.32
CCDC88B-202ENST00000356786 NDUFB4O95168 129 aa17.04■□□□□ 0.32
CCDC88B-202ENST00000356786 P01737 135 aa17.04■□□□□ 0.32
CCDC88B-202ENST00000356786 COL9A1P20849 921 aa17.04■□□□□ 0.32
CCDC88B-202ENST00000356786 COL8A1P27658 744 aa17.04■□□□□ 0.32
CCDC88B-202ENST00000356786 RASL10BQ96S79 203 aa17.04■□□□□ 0.32
CCDC88B-202ENST00000356786 PEBP1P30086 187 aaKnown RBP17.04■□□□□ 0.32
CCDC88B-202ENST00000356786 MFAP2P55001 183 aa17.04■□□□□ 0.32
CCDC88B-202ENST00000356786 LRRC3BQ96PB8 259 aa17.04■□□□□ 0.32
CCDC88B-202ENST00000356786 A0A1W2PN81 502 aa17.04■□□□□ 0.32
CCDC88B-202ENST00000356786 RPL36A-HNRNPH2H7BZ11 118 aa17.04■□□□□ 0.32
CCDC88B-202ENST00000356786 CDIPTO14735 213 aa17.04■□□□□ 0.32
CCDC88B-202ENST00000356786 RNPS1Q15287 305 aaKnown RBP17.04■□□□□ 0.32
CCDC88B-202ENST00000356786 TP53RKQ96S44 253 aa17.04■□□□□ 0.32
CCDC88B-202ENST00000356786 C5orf66Q9H5L9 145 aa17.04■□□□□ 0.32
CCDC88B-202ENST00000356786 DCAF16Q9NXF7 216 aa17.04■□□□□ 0.32
CCDC88B-202ENST00000356786 CLN8Q9UBY8 286 aa17.04■□□□□ 0.32
CCDC88B-202ENST00000356786 ZNFX1Q9P2E3 1918 aaKnown RBP17.04■□□□□ 0.32
CCDC88B-202ENST00000356786 TRGV5A0A0B4J1U4 118 aa17.03■□□□□ 0.32
CCDC88B-202ENST00000356786 LINC00587B1AMM8 73 aa17.03■□□□□ 0.32
CCDC88B-202ENST00000356786 NPIPB9F8W1W9 429 aa17.03■□□□□ 0.32
CCDC88B-202ENST00000356786 SMIM17P0DL12 118 aa17.03■□□□□ 0.32
CCDC88B-202ENST00000356786 ACER2Q5QJU3 275 aa17.03■□□□□ 0.32
CCDC88B-202ENST00000356786 ZNF343Q6P1L6 599 aa17.03■□□□□ 0.32
CCDC88B-202ENST00000356786 AQP3Q92482 292 aa17.03■□□□□ 0.32
CCDC88B-202ENST00000356786 DPF1Q92782 380 aa17.03■□□□□ 0.32
CCDC88B-202ENST00000356786 PLA2G2FQ9BZM2 168 aa17.03■□□□□ 0.32
CCDC88B-202ENST00000356786 OR6C3Q9NZP0 311 aa17.03■□□□□ 0.32
CCDC88B-202ENST00000356786 IGKV1-8A0A0C4DH67 115 aa17.03■□□□□ 0.32
CCDC88B-202ENST00000356786 SMPD2O60906 423 aa17.03■□□□□ 0.32
CCDC88B-202ENST00000356786 HAND1O96004 215 aa17.03■□□□□ 0.32
CCDC88B-202ENST00000356786 KIR2DS2P43631 304 aa17.03■□□□□ 0.32
CCDC88B-202ENST00000356786 LHX9Q9NQ69 397 aa17.03■□□□□ 0.32
CCDC88B-202ENST00000356786 UNC13CQ8NB66 2214 aa17.03■□□□□ 0.32
CCDC88B-202ENST00000356786 CORTO00230 105 aa17.03■□□□□ 0.32
CCDC88B-202ENST00000356786 ZXDCQ2QGD7 858 aaPredicted RBP17.03■□□□□ 0.32
CCDC88B-202ENST00000356786 LMX1BO60663 402 aa17.03■□□□□ 0.32
CCDC88B-202ENST00000356786 CD8AP01732 235 aa17.03■□□□□ 0.32
CCDC88B-202ENST00000356786 MRPS11P82912 194 aaKnown RBP17.03■□□□□ 0.32
CCDC88B-202ENST00000356786 OR4A47Q6IF82 309 aa17.03■□□□□ 0.32
CCDC88B-202ENST00000356786 ZNF600Q6ZNG1 722 aa17.03■□□□□ 0.32
CCDC88B-202ENST00000356786 GPX7Q96SL4 187 aaPredicted RBP17.03■□□□□ 0.32
CCDC88B-202ENST00000356786 PCED1AQ9H1Q7 454 aa17.03■□□□□ 0.32
CCDC88B-202ENST00000356786 C3orf80F5H4A9 247 aa17.02■□□□□ 0.32
CCDC88B-202ENST00000356786 DXOO77932 396 aaKnown RBP17.02■□□□□ 0.32
CCDC88B-202ENST00000356786 SRFP11831 508 aa17.02■□□□□ 0.32
CCDC88B-202ENST00000356786 UCN2Q96RP3 112 aa17.02■□□□□ 0.32
CCDC88B-202ENST00000356786 PHF7Q9BWX1 381 aaPredicted RBP17.02■□□□□ 0.32
CCDC88B-202ENST00000356786 SLC36A1Q7Z2H8 476 aa17.02■□□□□ 0.32
CCDC88B-202ENST00000356786 OR4A4PQ8NGN8 299 aa17.02■□□□□ 0.32
CCDC88B-202ENST00000356786 YBX2Q9Y2T7 364 aaKnown RBP17.02■□□□□ 0.32
CCDC88B-202ENST00000356786 NDUFB3O43676 98 aa17.02■□□□□ 0.32
CCDC88B-202ENST00000356786 DANCRP0C864 163 aa17.02■□□□□ 0.32
CCDC88B-202ENST00000356786 SRP14P37108 136 aaKnown RBP17.02■□□□□ 0.32
CCDC88B-202ENST00000356786 DHRS13Q6UX07 377 aa17.02■□□□□ 0.32
CCDC88B-202ENST00000356786 OR4B1Q8NGF8 309 aa17.02■□□□□ 0.32
CCDC88B-202ENST00000356786 KCNMB2Q9Y691 235 aa17.02■□□□□ 0.32
CCDC88B-202ENST00000356786 MELTFP08582 738 aa17.02■□□□□ 0.31
CCDC88B-202ENST00000356786 GUSBP11Q6P575 273 aa17.02■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms