RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 TMEM133Q9H2Q1 129 aa18.08■□□□□ 0.48
SHMT1-203ENST00000354098 HEXA-AS1Q9H8Q6 139 aa18.08■□□□□ 0.48
SHMT1-203ENST00000354098 KCNIP1Q9NZI2 227 aa18.08■□□□□ 0.48
SHMT1-203ENST00000354098 ZNF230Q9UIE0 474 aaPredicted RBP18.08■□□□□ 0.48
SHMT1-203ENST00000354098 FAM25AB3EWG3 89 aa18.07■□□□□ 0.48
SHMT1-203ENST00000354098 FAM25CB3EWG5 89 aa18.07■□□□□ 0.48
SHMT1-203ENST00000354098 FAM25GB3EWG6 89 aa18.07■□□□□ 0.48
SHMT1-203ENST00000354098 HBZP02008 142 aa18.07■□□□□ 0.48
SHMT1-203ENST00000354098 NFYBP25208 207 aa18.07■□□□□ 0.48
SHMT1-203ENST00000354098 MRPS15P82914 257 aaKnown RBP18.07■□□□□ 0.48
SHMT1-203ENST00000354098 TMEM69Q5SWH9 247 aa18.07■□□□□ 0.48
SHMT1-203ENST00000354098 PIP4P2Q8N4L2 257 aa18.07■□□□□ 0.48
SHMT1-203ENST00000354098 MAFIPQ8WZ33 124 aa18.07■□□□□ 0.48
SHMT1-203ENST00000354098 C6orf62Q9GZU0 229 aaPredicted RBP18.07■□□□□ 0.48
SHMT1-203ENST00000354098 AUNIPQ9H7T9 357 aa18.07■□□□□ 0.48
SHMT1-203ENST00000354098 Q9N2K0 584 aa18.07■□□□□ 0.48
SHMT1-203ENST00000354098 SSX5O60225 188 aa18.06■□□□□ 0.48
SHMT1-203ENST00000354098 IGHV3-7P01780 117 aa18.06■□□□□ 0.48
SHMT1-203ENST00000354098 FCGR3AP08637 254 aa18.06■□□□□ 0.48
SHMT1-203ENST00000354098 EPHA1P21709 976 aa18.06■□□□□ 0.48
SHMT1-203ENST00000354098 UBE2E1P51965 193 aa18.06■□□□□ 0.48
SHMT1-203ENST00000354098 TAS2R20P59543 309 aa18.06■□□□□ 0.48
SHMT1-203ENST00000354098 TRAT1Q6PIZ9 186 aa18.06■□□□□ 0.48
SHMT1-203ENST00000354098 MCFD2Q8NI22 146 aa18.06■□□□□ 0.48
SHMT1-203ENST00000354098 LEAP2Q969E1 77 aa18.06■□□□□ 0.48
SHMT1-203ENST00000354098 NXF2Q9GZY0 626 aaKnown RBP18.06■□□□□ 0.48
SHMT1-203ENST00000354098 IGHV3-43A0A0B4J1X8 118 aa18.06■□□□□ 0.48
SHMT1-203ENST00000354098 SPINT2O43291 252 aa18.06■□□□□ 0.48
SHMT1-203ENST00000354098 IGHV3-43DP0DP04 118 aa18.06■□□□□ 0.48
SHMT1-203ENST00000354098 GUCA2AQ02747 115 aa18.06■□□□□ 0.48
SHMT1-203ENST00000354098 OR13D1Q8NGV5 346 aa18.06■□□□□ 0.48
SHMT1-203ENST00000354098 NIPBLQ6KC79 2804 aaeCLIP18.05■□□□□ 0.48
SHMT1-203ENST00000354098 CUBNO60494 3623 aa18.05■□□□□ 0.48
SHMT1-203ENST00000354098 IGHV2-26A0A0B4J1V2 119 aa18.05■□□□□ 0.48
SHMT1-203ENST00000354098 F2RL2O00254 374 aa18.05■□□□□ 0.48
SHMT1-203ENST00000354098 MELTFP08582 738 aa18.05■□□□□ 0.48
SHMT1-203ENST00000354098 FPR2P25090 351 aa18.05■□□□□ 0.48
SHMT1-203ENST00000354098 TALDO1P37837 337 aa18.05■□□□□ 0.48
SHMT1-203ENST00000354098 LOXL3P58215 753 aa18.05■□□□□ 0.48
SHMT1-203ENST00000354098 GNG2P59768 71 aa18.05■□□□□ 0.48
SHMT1-203ENST00000354098 HMGN3Q15651 99 aa18.05■□□□□ 0.48
SHMT1-203ENST00000354098 PNLIPRP3Q17RR3 467 aa18.05■□□□□ 0.48
SHMT1-203ENST00000354098 OR52W1Q6IF63 320 aa18.05■□□□□ 0.48
SHMT1-203ENST00000354098 MOB1BQ7L9L4 216 aa18.05■□□□□ 0.48
SHMT1-203ENST00000354098 GCDHQ92947 438 aaPredicted RBP18.05■□□□□ 0.48
SHMT1-203ENST00000354098 MS4A7Q9GZW8 240 aaPredicted RBP18.05■□□□□ 0.48
SHMT1-203ENST00000354098 ZNF286AQ9HBT8 521 aa18.05■□□□□ 0.48
SHMT1-203ENST00000354098 MRPS7Q9Y2R9 242 aaKnown RBP18.05■□□□□ 0.48
SHMT1-203ENST00000354098 ZFHX3Q15911 3703 aa18.05■□□□□ 0.48
SHMT1-203ENST00000354098 SDCBPO00560 298 aaPredicted RBP18.04■□□□□ 0.48
SHMT1-203ENST00000354098 HLA-DQB1P01920 261 aa18.04■□□□□ 0.48
SHMT1-203ENST00000354098 FAM157CP0CG43 387 aa18.04■□□□□ 0.48
SHMT1-203ENST00000354098 MNDAP41218 407 aa18.04■□□□□ 0.48
SHMT1-203ENST00000354098 ZNF554Q86TJ5 538 aa18.04■□□□□ 0.48
SHMT1-203ENST00000354098 ABHD12Q8N2K0 398 aa18.04■□□□□ 0.48
SHMT1-203ENST00000354098 OR10A7Q8NGE5 316 aa18.04■□□□□ 0.48
SHMT1-203ENST00000354098 EXTL2Q9UBQ6 330 aa18.04■□□□□ 0.48
SHMT1-203ENST00000354098 NAV3Q8IVL0 2385 aa18.03■□□□□ 0.48
SHMT1-203ENST00000354098 A0A087X0M5 115 aa18.03■□□□□ 0.48
SHMT1-203ENST00000354098 A0A1B0GX30 115 aa18.03■□□□□ 0.48
SHMT1-203ENST00000354098 NPFFO15130 113 aa18.03■□□□□ 0.48
SHMT1-203ENST00000354098 SCTP09683 121 aa18.03■□□□□ 0.48
SHMT1-203ENST00000354098 OR11H6Q8NGC7 330 aa18.03■□□□□ 0.48
SHMT1-203ENST00000354098 CLEC7AQ9BXN2 247 aa18.03■□□□□ 0.48
SHMT1-203ENST00000354098 IGKV1D-8A0A087WSZ0 117 aa18.03■□□□□ 0.48
SHMT1-203ENST00000354098 POM121CA8CG34 1229 aa18.03■□□□□ 0.48
SHMT1-203ENST00000354098 ARG1P05089 322 aa18.03■□□□□ 0.48
SHMT1-203ENST00000354098 SAA4P35542 130 aa18.03■□□□□ 0.48
SHMT1-203ENST00000354098 HLA-DRB3P79483 266 aa18.03■□□□□ 0.48
SHMT1-203ENST00000354098 PITPNAQ00169 270 aa18.03■□□□□ 0.48
SHMT1-203ENST00000354098 OR52L2PQ8NGH6 319 aa18.03■□□□□ 0.48
SHMT1-203ENST00000354098 C17orf50Q8WW18 174 aa18.03■□□□□ 0.48
SHMT1-203ENST00000354098 IL1F10Q8WWZ1 152 aa18.03■□□□□ 0.48
SHMT1-203ENST00000354098 ST6GALNAC5Q9BVH7 336 aa18.03■□□□□ 0.48
SHMT1-203ENST00000354098 GFOD1Q9NXC2 390 aa18.03■□□□□ 0.48
SHMT1-203ENST00000354098 ZNRD1Q9P1U0 126 aa18.03■□□□□ 0.48
SHMT1-203ENST00000354098 MEIOCA2RUB1 952 aa18.02■□□□□ 0.47
SHMT1-203ENST00000354098 ODF3BA8MYP8 253 aa18.02■□□□□ 0.47
SHMT1-203ENST00000354098 TRDCB7Z8K6 153 aa18.02■□□□□ 0.47
SHMT1-203ENST00000354098 CD34P28906 385 aa18.02■□□□□ 0.47
SHMT1-203ENST00000354098 BPIFB3P59826 476 aa18.02■□□□□ 0.47
SHMT1-203ENST00000354098 GNMTQ14749 295 aa18.02■□□□□ 0.47
SHMT1-203ENST00000354098 ZNF626Q68DY1 528 aa18.02■□□□□ 0.47
SHMT1-203ENST00000354098 CNIH2Q6PI25 160 aa18.02■□□□□ 0.47
SHMT1-203ENST00000354098 C9orf139Q6ZV77 190 aa18.02■□□□□ 0.47
SHMT1-203ENST00000354098 OR10V1Q8NGI7 309 aa18.02■□□□□ 0.47
SHMT1-203ENST00000354098 GALMQ96C23 342 aa18.02■□□□□ 0.47
SHMT1-203ENST00000354098 SLC6A7Q99884 636 aa18.02■□□□□ 0.47
SHMT1-203ENST00000354098 OR2S2Q9NQN1 319 aa18.02■□□□□ 0.47
SHMT1-203ENST00000354098 PSG11Q9UQ72 335 aa18.02■□□□□ 0.47
SHMT1-203ENST00000354098 A0A0U1RQK1 487 aa18.01■□□□□ 0.47
SHMT1-203ENST00000354098 DTYMKP23919 212 aa18.01■□□□□ 0.47
SHMT1-203ENST00000354098 LDLRAD2Q5SZI1 272 aa18.01■□□□□ 0.47
SHMT1-203ENST00000354098 LHFPL4Q7Z7J7 247 aa18.01■□□□□ 0.47
SHMT1-203ENST00000354098 SNX29P2Q8IUI4 249 aa18.01■□□□□ 0.47
SHMT1-203ENST00000354098 OR52M1Q8NGK5 317 aa18.01■□□□□ 0.47
SHMT1-203ENST00000354098 RAB9BQ9NP90 201 aa18.01■□□□□ 0.47
SHMT1-203ENST00000354098 GNG12Q9UBI6 72 aa18.01■□□□□ 0.47
SHMT1-203ENST00000354098 MGAT4AQ9UM21 535 aa18.01■□□□□ 0.47
SHMT1-203ENST00000354098 IGKV1-6A0A0C4DH72 117 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms