RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 OPN3Q9H1Y3 402 aaPredicted RBP8.77□□□□□ -1.01
LIMA1-201ENST00000341247 PTPRBP23467 1997 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 CDRT15L2A8MXV6 281 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 TRIM77I1YAP6 450 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 CDK2AP1O14519 115 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 SERPINE2P07093 398 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 HLA-DRB3P79483 266 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 RUNX1Q01196 453 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 FAM76BQ5HYJ3 339 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 FAM180AQ6UWF9 173 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 C20orf24Q9BUV8 137 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 OPA3Q9H6K4 179 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 SPACA1Q9HBV2 294 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 ASCL3Q9NQ33 180 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 OR2W1Q9Y3N9 320 aa8.77□□□□□ -1.01
LIMA1-201ENST00000341247 CHST1O43916 411 aa8.76□□□□□ -1.01
LIMA1-201ENST00000341247 TMEM50AO95807 157 aa8.76□□□□□ -1.01
LIMA1-201ENST00000341247 KIR2DL2P43627 348 aaPredicted RBP8.76□□□□□ -1.01
LIMA1-201ENST00000341247 GABRA6Q16445 453 aa8.76□□□□□ -1.01
LIMA1-201ENST00000341247 LTC4SQ16873 150 aa8.76□□□□□ -1.01
LIMA1-201ENST00000341247 Q6P435 159 aa8.76□□□□□ -1.01
LIMA1-201ENST00000341247 UBAC2Q8NBM4 344 aa8.76□□□□□ -1.01
LIMA1-201ENST00000341247 OR5C1Q8NGR4 320 aa8.76□□□□□ -1.01
LIMA1-201ENST00000341247 BOD1Q96IK1 185 aa8.76□□□□□ -1.01
LIMA1-201ENST00000341247 PLK3Q9H4B4 646 aa8.76□□□□□ -1.01
LIMA1-201ENST00000341247 FAM212BQ9NTI7 297 aaPredicted RBP8.76□□□□□ -1.01
LIMA1-201ENST00000341247 CLCF1Q9UBD9 225 aa8.76□□□□□ -1.01
LIMA1-201ENST00000341247 USF3Q68DE3 2245 aa8.76□□□□□ -1.01
LIMA1-201ENST00000341247 GAPDHP04406 335 aaKnown RBP8.76□□□□□ -1.01
LIMA1-201ENST00000341247 P2RY1P47900 373 aa8.76□□□□□ -1.01
LIMA1-201ENST00000341247 CEBPGP53567 150 aa8.76□□□□□ -1.01
LIMA1-201ENST00000341247 IL13RA2Q14627 380 aa8.76□□□□□ -1.01
LIMA1-201ENST00000341247 ZNF324BQ6AW86 544 aaPredicted RBP8.76□□□□□ -1.01
LIMA1-201ENST00000341247 BTNL8Q6UX41 500 aa8.76□□□□□ -1.01
LIMA1-201ENST00000341247 IL34Q6ZMJ4 242 aa8.76□□□□□ -1.01
LIMA1-201ENST00000341247 SAT2Q96F10 170 aaPredicted RBP8.76□□□□□ -1.01
LIMA1-201ENST00000341247 FBXO7Q9Y3I1 522 aa8.76□□□□□ -1.01
LIMA1-201ENST00000341247 GPR37O15354 613 aa8.76□□□□□ -1.01
LIMA1-201ENST00000341247 PSPNO60542 156 aa8.76□□□□□ -1.01
LIMA1-201ENST00000341247 CDS2O95674 445 aa8.76□□□□□ -1.01
LIMA1-201ENST00000341247 IAPPP10997 89 aa8.76□□□□□ -1.01
LIMA1-201ENST00000341247 PMELP40967 661 aa8.76□□□□□ -1.01
LIMA1-201ENST00000341247 PIP4P1Q86T03 277 aa8.76□□□□□ -1.01
LIMA1-201ENST00000341247 ZNF808Q8N4W9 903 aaPredicted RBP8.76□□□□□ -1.01
LIMA1-201ENST00000341247 ZNF610Q8N9Z0 462 aa8.76□□□□□ -1.01
LIMA1-201ENST00000341247 TMEM171Q8WVE6 324 aa8.76□□□□□ -1.01
LIMA1-201ENST00000341247 DOCK11Q5JSL3 2073 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 GALR2O43603 387 aaPredicted RBP8.75□□□□□ -1.01
LIMA1-201ENST00000341247 TIMM8AO60220 97 aaPredicted RBP8.75□□□□□ -1.01
LIMA1-201ENST00000341247 PVALBP20472 110 aaPredicted RBP8.75□□□□□ -1.01
LIMA1-201ENST00000341247 F2RP25116 425 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 CEACAM6P40199 344 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 F2RL1P55085 397 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 AESQ08117 197 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 TMEM267Q0VDI3 215 aaPredicted RBP8.75□□□□□ -1.01
LIMA1-201ENST00000341247 FAM185AQ8N0U4 392 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 OR10V1Q8NGI7 309 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 GLRX2Q9NS18 164 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 PPP1CCP36873 323 aaKnown RBP8.75□□□□□ -1.01
LIMA1-201ENST00000341247 DYNLT3P51808 116 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 Q6ZT83 130 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 TMEM252Q8N6L7 170 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 RFESDQ8TAC1 157 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 GPR146Q96CH1 333 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 TMEM56Q96MV1 263 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 TAAR6Q96RI8 345 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 PKIBQ9C010 78 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 DUSP13Q9UII6 198 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 TMEM56-RWDD3S4R434 201 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 VPS13CQ709C8 3753 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 ZFHX3Q15911 3703 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 IGHV3-43A0A0B4J1X8 118 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 TRAV17A0A0B4J275 112 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 LRP5LA4QPB2 252 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 MLNRO43193 412 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 EIF3GO75821 320 aaKnown RBP eCLIP8.75□□□□□ -1.01
LIMA1-201ENST00000341247 CTXN2P0C2S0 81 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 IGHV3-43DP0DP04 118 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 VDAC1P21796 283 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 OR3A1P47881 315 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 GPR157Q5UAW9 335 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 VHLLQ6RSH7 139 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 Q6ZRM9 215 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 RPRMLQ8N4K4 120 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 CLRN3Q8NCR9 226 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 OR2G3Q8NGZ4 309 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 OR1L1Q8NH94 360 aa8.75□□□□□ -1.01
LIMA1-201ENST00000341247 IGHV3-13P01766 116 aa8.74□□□□□ -1.01
LIMA1-201ENST00000341247 IGHV3-7P01780 117 aa8.74□□□□□ -1.01
LIMA1-201ENST00000341247 UCP1P25874 307 aa8.74□□□□□ -1.01
LIMA1-201ENST00000341247 SRPXP78539 464 aa8.74□□□□□ -1.01
LIMA1-201ENST00000341247 H1FOOQ8IZA3 346 aaPredicted RBP8.74□□□□□ -1.01
LIMA1-201ENST00000341247 SPIN2AQ99865 258 aa8.74□□□□□ -1.01
LIMA1-201ENST00000341247 SPIN2BQ9BPZ2 258 aa8.74□□□□□ -1.01
LIMA1-201ENST00000341247 PARP11Q9NR21 331 aa8.74□□□□□ -1.01
LIMA1-201ENST00000341247 C19orf12Q9NSK7 152 aa8.74□□□□□ -1.01
LIMA1-201ENST00000341247 CACNG5Q9UF02 275 aa8.74□□□□□ -1.01
LIMA1-201ENST00000341247 POLDIP2Q9Y2S7 368 aa8.74□□□□□ -1.01
LIMA1-201ENST00000341247 APC2O95996 2303 aa8.74□□□□□ -1.01
LIMA1-201ENST00000341247 DEFB108AA8MXU0 73 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms