RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 OCSTAMPQ9BR26 566 aa18.15■□□□□ 0.5
SDC3-202ENST00000339394 IDI2-AS1Q9NZ38 188 aa18.15■□□□□ 0.5
SDC3-202ENST00000339394 MEIS3P1A6NDR6 274 aa18.14■□□□□ 0.49
SDC3-202ENST00000339394 SRSF7Q16629 238 aaKnown RBP eCLIP18.14■□□□□ 0.49
SDC3-202ENST00000339394 PYHIN1Q6K0P9 492 aa18.14■□□□□ 0.49
SDC3-202ENST00000339394 FAM131AQ6UXB0 335 aa18.14■□□□□ 0.49
SDC3-202ENST00000339394 GVQW1Q8N7I0 195 aa18.14■□□□□ 0.49
SDC3-202ENST00000339394 TRDCB7Z8K6 153 aa18.13■□□□□ 0.49
SDC3-202ENST00000339394 LPLP06858 475 aa18.13■□□□□ 0.49
SDC3-202ENST00000339394 SCTP09683 121 aa18.13■□□□□ 0.49
SDC3-202ENST00000339394 HLA-DRB3P79483 266 aa18.13■□□□□ 0.49
SDC3-202ENST00000339394 LTC4SQ16873 150 aa18.13■□□□□ 0.49
SDC3-202ENST00000339394 Q6ZS49 121 aa18.13■□□□□ 0.49
SDC3-202ENST00000339394 GPX8Q8TED1 209 aa18.13■□□□□ 0.49
SDC3-202ENST00000339394 SCPEP1Q9HB40 452 aa18.13■□□□□ 0.49
SDC3-202ENST00000339394 RAB9BQ9NP90 201 aa18.13■□□□□ 0.49
SDC3-202ENST00000339394 RABL2AQ9UBK7 228 aaPredicted RBP18.13■□□□□ 0.49
SDC3-202ENST00000339394 RABL2BQ9UNT1 228 aa18.13■□□□□ 0.49
SDC3-202ENST00000339394 SESN1Q9Y6P5 492 aa18.13■□□□□ 0.49
SDC3-202ENST00000339394 V9GYH0 126 aa18.13■□□□□ 0.49
SDC3-202ENST00000339394 KIAA2026Q5HYC2 2103 aa18.13■□□□□ 0.49
SDC3-202ENST00000339394 IGKV1D-8A0A087WSZ0 117 aa18.13■□□□□ 0.49
SDC3-202ENST00000339394 F2RL2O00254 374 aa18.13■□□□□ 0.49
SDC3-202ENST00000339394 FPR2P25090 351 aa18.13■□□□□ 0.49
SDC3-202ENST00000339394 ETV6P41212 452 aa18.13■□□□□ 0.49
SDC3-202ENST00000339394 KIR2DS4P43632 304 aa18.13■□□□□ 0.49
SDC3-202ENST00000339394 CBX5P45973 191 aa18.13■□□□□ 0.49
SDC3-202ENST00000339394 KIR2DS1Q14954 304 aa18.13■□□□□ 0.49
SDC3-202ENST00000339394 SPANXN2Q5MJ10 180 aa18.13■□□□□ 0.49
SDC3-202ENST00000339394 FAM120AOSQ5T036 256 aa18.13■□□□□ 0.49
SDC3-202ENST00000339394 OR10A7Q8NGE5 316 aa18.13■□□□□ 0.49
SDC3-202ENST00000339394 LHX4Q969G2 390 aa18.13■□□□□ 0.49
SDC3-202ENST00000339394 GALMQ96C23 342 aa18.13■□□□□ 0.49
SDC3-202ENST00000339394 DSCAML1Q8TD84 2053 aa18.12■□□□□ 0.49
SDC3-202ENST00000339394 SULT1C2O00338 296 aa18.12■□□□□ 0.49
SDC3-202ENST00000339394 FCER2P06734 321 aa18.12■□□□□ 0.49
SDC3-202ENST00000339394 GSTT2P0CG29 244 aa18.12■□□□□ 0.49
SDC3-202ENST00000339394 GSTT2BP0CG30 244 aa18.12■□□□□ 0.49
SDC3-202ENST00000339394 HOXB4P17483 251 aaPredicted RBP18.12■□□□□ 0.49
SDC3-202ENST00000339394 NFYBP25208 207 aa18.12■□□□□ 0.49
SDC3-202ENST00000339394 LOXL3P58215 753 aa18.12■□□□□ 0.49
SDC3-202ENST00000339394 UTF1Q5T230 341 aa18.12■□□□□ 0.49
SDC3-202ENST00000339394 HOGA1Q86XE5 327 aa18.12■□□□□ 0.49
SDC3-202ENST00000339394 PDZD9Q8IXQ8 264 aa18.12■□□□□ 0.49
SDC3-202ENST00000339394 IL1F10Q8WWZ1 152 aa18.12■□□□□ 0.49
SDC3-202ENST00000339394 TMEM133Q9H2Q1 129 aa18.12■□□□□ 0.49
SDC3-202ENST00000339394 ZNF286AQ9HBT8 521 aa18.12■□□□□ 0.49
SDC3-202ENST00000339394 FAM172BPA6NC97 362 aa18.11■□□□□ 0.49
SDC3-202ENST00000339394 RNASEK-C17orf49H0YIS7 233 aa18.11■□□□□ 0.49
SDC3-202ENST00000339394 FABP7O15540 132 aa18.11■□□□□ 0.49
SDC3-202ENST00000339394 KLRD1Q13241 179 aa18.11■□□□□ 0.49
SDC3-202ENST00000339394 KLF17Q5JT82 389 aaPredicted RBP18.11■□□□□ 0.49
SDC3-202ENST00000339394 OR52W1Q6IF63 320 aa18.11■□□□□ 0.49
SDC3-202ENST00000339394 HCP5Q6MZN7 132 aa18.11■□□□□ 0.49
SDC3-202ENST00000339394 OR52I2Q8NH67 350 aa18.11■□□□□ 0.49
SDC3-202ENST00000339394 SUCNR1Q9BXA5 334 aa18.11■□□□□ 0.49
SDC3-202ENST00000339394 HEXA-AS1Q9H8Q6 139 aa18.11■□□□□ 0.49
SDC3-202ENST00000339394 TMEM160Q9NX00 188 aa18.11■□□□□ 0.49
SDC3-202ENST00000339394 CENPVL3A0A0U1RRI6 287 aa18.1■□□□□ 0.49
SDC3-202ENST00000339394 SDCBPO00560 298 aaPredicted RBP18.1■□□□□ 0.49
SDC3-202ENST00000339394 CTDSPLO15194 276 aa18.1■□□□□ 0.49
SDC3-202ENST00000339394 HTD2P86397 168 aa18.1■□□□□ 0.49
SDC3-202ENST00000339394 RNASE12Q5GAN4 147 aaKnown RBP18.1■□□□□ 0.49
SDC3-202ENST00000339394 NCR3LG1Q68D85 454 aa18.1■□□□□ 0.49
SDC3-202ENST00000339394 FAM53AQ6NSI3 398 aaPredicted RBP18.1■□□□□ 0.49
SDC3-202ENST00000339394 LINC00299Q6ZSB3 139 aa18.1■□□□□ 0.49
SDC3-202ENST00000339394 BEST4Q8NFU0 473 aa18.1■□□□□ 0.49
SDC3-202ENST00000339394 OR52M1Q8NGK5 317 aa18.1■□□□□ 0.49
SDC3-202ENST00000339394 OR4A4PQ8NGN8 299 aa18.1■□□□□ 0.49
SDC3-202ENST00000339394 IFT46Q9NQC8 304 aa18.1■□□□□ 0.49
SDC3-202ENST00000339394 OR2S2Q9NQN1 319 aa18.1■□□□□ 0.49
SDC3-202ENST00000339394 KLK11Q9UBX7 282 aa18.1■□□□□ 0.49
SDC3-202ENST00000339394 A0A087X0M5 115 aa18.09■□□□□ 0.49
SDC3-202ENST00000339394 IGHV3-43A0A0B4J1X8 118 aa18.09■□□□□ 0.49
SDC3-202ENST00000339394 TRAV40A0A0B4J280 105 aa18.09■□□□□ 0.49
SDC3-202ENST00000339394 IGKV1-6A0A0C4DH72 117 aa18.09■□□□□ 0.49
SDC3-202ENST00000339394 A0A1B0GX30 115 aa18.09■□□□□ 0.49
SDC3-202ENST00000339394 GABARAPH6UMI1 98 aa18.09■□□□□ 0.49
SDC3-202ENST00000339394 IGHV3-43DP0DP04 118 aa18.09■□□□□ 0.49
SDC3-202ENST00000339394 IGHV4-38-2P0DP08 117 aa18.09■□□□□ 0.49
SDC3-202ENST00000339394 COX7A1P24310 79 aa18.09■□□□□ 0.49
SDC3-202ENST00000339394 MRPS10P82664 201 aaKnown RBP18.09■□□□□ 0.49
SDC3-202ENST00000339394 DGCR2P98153 550 aa18.09■□□□□ 0.49
SDC3-202ENST00000339394 HERPUD1Q15011 391 aa18.09■□□□□ 0.49
SDC3-202ENST00000339394 ZNF79Q15937 498 aa18.09■□□□□ 0.49
SDC3-202ENST00000339394 IGSF11Q5DX21 431 aa18.09■□□□□ 0.49
SDC3-202ENST00000339394 IL17RELQ6ZVW7 336 aa18.09■□□□□ 0.49
SDC3-202ENST00000339394 OR52L2PQ8NGH6 319 aa18.09■□□□□ 0.49
SDC3-202ENST00000339394 OR13D1Q8NGV5 346 aa18.09■□□□□ 0.49
SDC3-202ENST00000339394 NANPQ8TBE9 248 aa18.09■□□□□ 0.49
SDC3-202ENST00000339394 FCAMRQ8WWV6 532 aa18.09■□□□□ 0.49
SDC3-202ENST00000339394 SNAPC3Q92966 411 aa18.09■□□□□ 0.49
SDC3-202ENST00000339394 GFOD1Q9NXC2 390 aa18.09■□□□□ 0.49
SDC3-202ENST00000339394 ANXA10Q9UJ72 324 aa18.09■□□□□ 0.49
SDC3-202ENST00000339394 ANAPC10Q9UM13 185 aa18.09■□□□□ 0.49
SDC3-202ENST00000339394 HIVEP2P31629 2446 aa18.09■□□□□ 0.49
SDC3-202ENST00000339394 ZFHX3Q15911 3703 aa18.09■□□□□ 0.49
SDC3-202ENST00000339394 IGHV3OR16-10A0A075B7F0 116 aa18.08■□□□□ 0.49
SDC3-202ENST00000339394 IGHV2-26A0A0B4J1V2 119 aa18.08■□□□□ 0.49
SDC3-202ENST00000339394 IGHV3-7P01780 117 aa18.08■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms