RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 OR2T10Q8NGZ9 312 aa11.05□□□□□ -0.64
SDC3-201ENST00000336798 MBD1Q9UIS9 605 aaPredicted RBP11.05□□□□□ -0.64
SDC3-201ENST00000336798 CLDN18P56856 261 aa11.05□□□□□ -0.64
SDC3-201ENST00000336798 FAM216AQ8WUB2 273 aa11.05□□□□□ -0.64
SDC3-201ENST00000336798 RSG1Q9BU20 258 aa11.05□□□□□ -0.64
SDC3-201ENST00000336798 CLDN14O95500 239 aa11.05□□□□□ -0.64
SDC3-201ENST00000336798 HIST1H1EP10412 219 aaKnown RBP11.05□□□□□ -0.64
SDC3-201ENST00000336798 LYZL2Q7Z4W2 148 aa11.05□□□□□ -0.64
SDC3-201ENST00000336798 MSRB3Q8IXL7 192 aa11.05□□□□□ -0.64
SDC3-201ENST00000336798 Q9N2K0 584 aa11.05□□□□□ -0.64
SDC3-201ENST00000336798 MANBALQ9NQG1 85 aa11.05□□□□□ -0.64
SDC3-201ENST00000336798 PRSS50Q9UI38 385 aa11.05□□□□□ -0.64
SDC3-201ENST00000336798 APCSP02743 223 aa11.04□□□□□ -0.64
SDC3-201ENST00000336798 DMRTA1Q5VZB9 504 aa11.04□□□□□ -0.64
SDC3-201ENST00000336798 GBGT1Q8N5D6 347 aa11.04□□□□□ -0.64
SDC3-201ENST00000336798 NUP37Q8NFH4 326 aa11.04□□□□□ -0.64
SDC3-201ENST00000336798 COMPP49747 757 aaPredicted RBP11.04□□□□□ -0.64
SDC3-201ENST00000336798 IL24Q13007 206 aa11.04□□□□□ -0.64
SDC3-201ENST00000336798 AWAT1Q58HT5 328 aa11.04□□□□□ -0.64
SDC3-201ENST00000336798 AMMECR1LQ6DCA0 310 aa11.04□□□□□ -0.64
SDC3-201ENST00000336798 C16orf92Q96LL3 132 aa11.04□□□□□ -0.64
SDC3-201ENST00000336798 RBM38Q9H0Z9 239 aaKnown RBP11.04□□□□□ -0.64
SDC3-201ENST00000336798 CORTO00230 105 aa11.04□□□□□ -0.64
SDC3-201ENST00000336798 CELA2AP08217 269 aa11.04□□□□□ -0.64
SDC3-201ENST00000336798 MDKP21741 143 aaPredicted RBP11.04□□□□□ -0.64
SDC3-201ENST00000336798 VDAC1P21796 283 aa11.04□□□□□ -0.64
SDC3-201ENST00000336798 GAB4Q2WGN9 574 aa11.04□□□□□ -0.64
SDC3-201ENST00000336798 KRTCAP3Q53RY4 240 aa11.04□□□□□ -0.64
SDC3-201ENST00000336798 GLRX2Q9NS18 164 aa11.04□□□□□ -0.64
SDC3-201ENST00000336798 RCC2Q9P258 522 aaKnown RBP11.04□□□□□ -0.64
SDC3-201ENST00000336798 ANKRD20A5PA0PJZ0 165 aa11.04□□□□□ -0.64
SDC3-201ENST00000336798 IGF2P01344 180 aa11.04□□□□□ -0.64
SDC3-201ENST00000336798 C9orf62Q8N4C0 152 aa11.04□□□□□ -0.64
SDC3-201ENST00000336798 ABHD1Q96SE0 405 aa11.04□□□□□ -0.64
SDC3-201ENST00000336798 SLIRPQ9GZT3 109 aaKnown RBP11.04□□□□□ -0.64
SDC3-201ENST00000336798 UQCRFS1P47985 274 aa11.04□□□□□ -0.64
SDC3-201ENST00000336798 PRSS8Q16651 343 aa11.04□□□□□ -0.64
SDC3-201ENST00000336798 EID2BQ96D98 161 aa11.04□□□□□ -0.64
SDC3-201ENST00000336798 SMPD2O60906 423 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 TM4SF20Q53R12 229 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 HCP5Q6MZN7 132 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 CLEC2AQ6UVW9 174 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 ZAR1Q86SH2 424 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 TTTY12Q9BZ98 90 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 PAM16Q9Y3D7 125 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 J3QR06 171 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 SYNGR1O43759 233 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 PPYP01298 95 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 RPL31P62899 125 aaKnown RBP11.03□□□□□ -0.64
SDC3-201ENST00000336798 ZNF273Q14593 569 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 ATG101Q9BSB4 218 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 HIGD1AQ9Y241 93 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 CDK5RAP2Q96SN8 1893 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 PPIAL4EA0A075B759 164 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 SNURFLB1AK76 121 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 PPIAL4DF5H284 164 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 PPIAL4FP0DN26 164 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 NUBP1P53384 320 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 KHDC3LQ587J8 217 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 ZNF738Q8NE65 137 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 OR4B1Q8NGF8 309 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 VN1R17PQ8TDU5 208 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 GHITMQ9H3K2 345 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 PPIAL4AQ9Y536 164 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 NUP205Q92621 2012 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 BTAF1O14981 1849 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 STAG3L2P0CL84 134 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 EBLN2Q6P2I7 272 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 LIMS2Q7Z4I7 341 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 TP53RKQ96S44 253 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 CTSDP07339 412 aaPredicted RBP11.03□□□□□ -0.64
SDC3-201ENST00000336798 KIAA0040Q15053 153 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 GABRA6Q16445 453 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 OR4D11Q8NGI4 311 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 MS4A5Q9H3V2 200 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 DMRT1Q9Y5R6 373 aa11.03□□□□□ -0.64
SDC3-201ENST00000336798 DHRS7CA6NNS2 312 aa11.02□□□□□ -0.64
SDC3-201ENST00000336798 IL11P20809 199 aa11.02□□□□□ -0.64
SDC3-201ENST00000336798 KIR3DL2P43630 455 aa11.02□□□□□ -0.64
SDC3-201ENST00000336798 XAF1Q6GPH4 301 aa11.02□□□□□ -0.64
SDC3-201ENST00000336798 RAB37Q96AX2 223 aa11.02□□□□□ -0.64
SDC3-201ENST00000336798 RNF122Q9H9V4 155 aa11.02□□□□□ -0.64
SDC3-201ENST00000336798 ERVH48-1M5A8F1 160 aa11.02□□□□□ -0.64
SDC3-201ENST00000336798 SPICQ8N5J4 248 aa11.02□□□□□ -0.64
SDC3-201ENST00000336798 METTL26Q96S19 204 aa11.02□□□□□ -0.64
SDC3-201ENST00000336798 SIGLEC5O15389 551 aa11.02□□□□□ -0.65
SDC3-201ENST00000336798 P2RY1P47900 373 aa11.02□□□□□ -0.65
SDC3-201ENST00000336798 SIGLEC14Q08ET2 396 aa11.02□□□□□ -0.65
SDC3-201ENST00000336798 SLC25A53Q5H9E4 307 aa11.02□□□□□ -0.65
SDC3-201ENST00000336798 BPIFA4PQ86YQ2 179 aa11.02□□□□□ -0.65
SDC3-201ENST00000336798 LINC00587B1AMM8 73 aa11.02□□□□□ -0.65
SDC3-201ENST00000336798 SPINT1O43278 529 aa11.02□□□□□ -0.65
SDC3-201ENST00000336798 KLF7O75840 302 aaPredicted RBP11.02□□□□□ -0.65
SDC3-201ENST00000336798 IGKV3-20P01619 116 aa11.02□□□□□ -0.65
SDC3-201ENST00000336798 DCAF10Q5QP82 559 aa11.02□□□□□ -0.65
SDC3-201ENST00000336798 PIPOXQ9P0Z9 390 aa11.02□□□□□ -0.65
SDC3-201ENST00000336798 PRNDQ9UKY0 176 aa11.02□□□□□ -0.65
SDC3-201ENST00000336798 DEGS2Q6QHC5 323 aa11.02□□□□□ -0.65
SDC3-201ENST00000336798 REC114Q7Z4M0 266 aa11.02□□□□□ -0.65
SDC3-201ENST00000336798 OR5AU1Q8NGC0 362 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms