RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 MOSP00540 346 aa10.04□□□□□ -0.8
CD44-203ENST00000278386 DCKP27707 260 aa10.04□□□□□ -0.8
CD44-203ENST00000278386 DGCR2P98153 550 aa10.04□□□□□ -0.8
CD44-203ENST00000278386 MED21Q13503 144 aa10.04□□□□□ -0.8
CD44-203ENST00000278386 GPR50Q13585 617 aa10.04□□□□□ -0.8
CD44-203ENST00000278386 EBI3Q14213 229 aa10.04□□□□□ -0.8
CD44-203ENST00000278386 ZNF497Q6ZNH5 498 aa10.04□□□□□ -0.8
CD44-203ENST00000278386 Q8N6K4 173 aa10.04□□□□□ -0.8
CD44-203ENST00000278386 Q8N9W7 124 aa10.04□□□□□ -0.8
CD44-203ENST00000278386 OR10V1Q8NGI7 309 aa10.04□□□□□ -0.8
CD44-203ENST00000278386 OR8U1Q8NH10 309 aa10.04□□□□□ -0.8
CD44-203ENST00000278386 TFAP2CQ92754 450 aa10.04□□□□□ -0.8
CD44-203ENST00000278386 MUL1Q969V5 352 aa10.04□□□□□ -0.8
CD44-203ENST00000278386 RAX2Q96IS3 184 aa10.04□□□□□ -0.8
CD44-203ENST00000278386 SPACA1Q9HBV2 294 aa10.04□□□□□ -0.8
CD44-203ENST00000278386 S100A14Q9HCY8 104 aa10.04□□□□□ -0.8
CD44-203ENST00000278386 CHCHD3Q9NX63 227 aaKnown RBP10.04□□□□□ -0.8
CD44-203ENST00000278386 SMPD3Q9NY59 655 aaPredicted RBP10.04□□□□□ -0.8
CD44-203ENST00000278386 ETAA1Q9NY74 926 aa10.04□□□□□ -0.8
CD44-203ENST00000278386 ZMAT5Q9UDW3 170 aaKnown RBP10.04□□□□□ -0.8
CD44-203ENST00000278386 TRAPPC2LQ9UL33 140 aa10.04□□□□□ -0.8
CD44-203ENST00000278386 EXOSC1Q9Y3B2 195 aaKnown RBP10.04□□□□□ -0.8
CD44-203ENST00000278386 PNMA8CA0A1B0GUJ8 204 aa10.03□□□□□ -0.8
CD44-203ENST00000278386 C12orf77C9JDV5 145 aa10.03□□□□□ -0.8
CD44-203ENST00000278386 MCRIP1C9JLW8 97 aa10.03□□□□□ -0.8
CD44-203ENST00000278386 BAG2O95816 211 aa10.03□□□□□ -0.8
CD44-203ENST00000278386 VDAC1P21796 283 aa10.03□□□□□ -0.8
CD44-203ENST00000278386 CD1BP29016 333 aa10.03□□□□□ -0.8
CD44-203ENST00000278386 LUMP51884 338 aaPredicted RBP10.03□□□□□ -0.8
CD44-203ENST00000278386 GP2P55259 537 aaKnown RBP10.03□□□□□ -0.8
CD44-203ENST00000278386 GPR176Q14439 515 aa10.03□□□□□ -0.8
CD44-203ENST00000278386 PNLIPRP3Q17RR3 467 aa10.03□□□□□ -0.8
CD44-203ENST00000278386 Q499Y3 187 aa10.03□□□□□ -0.8
CD44-203ENST00000278386 C6orf183Q5T699 404 aa10.03□□□□□ -0.8
CD44-203ENST00000278386 SYT6Q5T7P8 510 aaPredicted RBP10.03□□□□□ -0.8
CD44-203ENST00000278386 AWAT2Q6E213 333 aa10.03□□□□□ -0.8
CD44-203ENST00000278386 ZFP41Q8N8Y5 198 aa10.03□□□□□ -0.8
CD44-203ENST00000278386 C8orf31Q8N9H6 132 aa10.03□□□□□ -0.8
CD44-203ENST00000278386 OR5M8Q8NGP6 311 aa10.03□□□□□ -0.8
CD44-203ENST00000278386 OR4K15Q8NH41 348 aa10.03□□□□□ -0.8
CD44-203ENST00000278386 S1PR3Q99500 378 aa10.03□□□□□ -0.8
CD44-203ENST00000278386 MRPS28Q9Y2Q9 187 aaKnown RBP10.03□□□□□ -0.8
CD44-203ENST00000278386 SIRT4Q9Y6E7 314 aaPredicted RBP10.03□□□□□ -0.8
CD44-203ENST00000278386 TRAV8-7A0A075B6U6 113 aa10.02□□□□□ -0.81
CD44-203ENST00000278386 TRBV5-5A0A0J9YX44 114 aa10.02□□□□□ -0.81
CD44-203ENST00000278386 ZNF736B4DX44 427 aaPredicted RBP10.02□□□□□ -0.81
CD44-203ENST00000278386 EBAG9O00559 213 aa10.02□□□□□ -0.81
CD44-203ENST00000278386 OGG1O15527 345 aa10.02□□□□□ -0.81
CD44-203ENST00000278386 LALBAP00709 142 aa10.02□□□□□ -0.81
CD44-203ENST00000278386 HBZP02008 142 aa10.02□□□□□ -0.81
CD44-203ENST00000278386 MT-ND4P03905 459 aa10.02□□□□□ -0.81
CD44-203ENST00000278386 IGFBP3P17936 291 aaPredicted RBP10.02□□□□□ -0.81
CD44-203ENST00000278386 FSTP19883 344 aa10.02□□□□□ -0.81
CD44-203ENST00000278386 MYF6P23409 242 aa10.02□□□□□ -0.81
CD44-203ENST00000278386 SOX6P35712 828 aa10.02□□□□□ -0.81
CD44-203ENST00000278386 FOXE3Q13461 319 aa10.02□□□□□ -0.81
CD44-203ENST00000278386 TMEM30BQ3MIR4 351 aa10.02□□□□□ -0.81
CD44-203ENST00000278386 Q3ZCU0 254 aa10.02□□□□□ -0.81
CD44-203ENST00000278386 YIF1BQ5BJH7 314 aa10.02□□□□□ -0.81
CD44-203ENST00000278386 RAB12Q6IQ22 244 aa10.02□□□□□ -0.81
CD44-203ENST00000278386 TRAT1Q6PIZ9 186 aa10.02□□□□□ -0.81
CD44-203ENST00000278386 GLIPR1L1Q6UWM5 242 aa10.02□□□□□ -0.81
CD44-203ENST00000278386 SLC25A48Q6ZT89 311 aaKnown RBP10.02□□□□□ -0.81
CD44-203ENST00000278386 TMEM104Q8NE00 496 aa10.02□□□□□ -0.81
CD44-203ENST00000278386 CYGBQ8WWM9 190 aa10.02□□□□□ -0.81
CD44-203ENST00000278386 GHSRQ92847 366 aa10.02□□□□□ -0.81
CD44-203ENST00000278386 ST6GALNAC6Q969X2 333 aa10.02□□□□□ -0.81
CD44-203ENST00000278386 WWC2-AS2Q96NR7 200 aa10.02□□□□□ -0.81
CD44-203ENST00000278386 RDH12Q96NR8 316 aa10.02□□□□□ -0.81
CD44-203ENST00000278386 OR14A2Q96R54 314 aa10.02□□□□□ -0.81
CD44-203ENST00000278386 HSPB9Q9BQS6 159 aa10.02□□□□□ -0.81
CD44-203ENST00000278386 DCLRE1BQ9H816 532 aa10.02□□□□□ -0.81
CD44-203ENST00000278386 BABAM2Q9NXR7 383 aa10.02□□□□□ -0.81
CD44-203ENST00000278386 RCC2Q9P258 522 aaKnown RBP10.02□□□□□ -0.81
CD44-203ENST00000278386 CLEC2DQ9UHP7 191 aa10.02□□□□□ -0.81
CD44-203ENST00000278386 DIMT1Q9UNQ2 313 aaKnown RBP10.02□□□□□ -0.81
CD44-203ENST00000278386 A0A1W2PPK0 400 aa10.01□□□□□ -0.81
CD44-203ENST00000278386 RAMP3O60896 148 aa10.01□□□□□ -0.81
CD44-203ENST00000278386 CRTAPO75718 401 aaPredicted RBP10.01□□□□□ -0.81
CD44-203ENST00000278386 MAS1P04201 325 aa10.01□□□□□ -0.81
CD44-203ENST00000278386 ELANEP08246 267 aa10.01□□□□□ -0.81
CD44-203ENST00000278386 SLC2A2P11168 524 aaPredicted RBP10.01□□□□□ -0.81
CD44-203ENST00000278386 MMDQ15546 238 aa10.01□□□□□ -0.81
CD44-203ENST00000278386 C9orf66Q5T8R8 295 aa10.01□□□□□ -0.81
CD44-203ENST00000278386 DMKNQ6E0U4 476 aaPredicted RBP10.01□□□□□ -0.81
CD44-203ENST00000278386 FAM71E2Q8N5Q1 922 aa10.01□□□□□ -0.81
CD44-203ENST00000278386 ZNF439Q8NDP4 499 aa10.01□□□□□ -0.81
CD44-203ENST00000278386 OR8H1Q8NGG4 311 aa10.01□□□□□ -0.81
CD44-203ENST00000278386 OR1L1Q8NH94 360 aa10.01□□□□□ -0.81
CD44-203ENST00000278386 RBMXL1Q96E39 390 aaKnown RBP10.01□□□□□ -0.81
CD44-203ENST00000278386 TMEM80Q96HE8 168 aa10.01□□□□□ -0.81
CD44-203ENST00000278386 PRR25Q96S07 402 aa10.01□□□□□ -0.81
CD44-203ENST00000278386 SELENOIQ9C0D9 397 aa10.01□□□□□ -0.81
CD44-203ENST00000278386 BANF2Q9H503 90 aa10.01□□□□□ -0.81
CD44-203ENST00000278386 ZNF107Q9UII5 783 aaPredicted RBP10.01□□□□□ -0.81
CD44-203ENST00000278386 PEX16Q9Y5Y5 336 aa10.01□□□□□ -0.81
CD44-203ENST00000278386 UBE2QL1A1L167 161 aa10□□□□□ -0.81
CD44-203ENST00000278386 SEC14L6B5MCN3 397 aa10□□□□□ -0.81
CD44-203ENST00000278386 VSIG8P0DPA2 414 aa10□□□□□ -0.81
CD44-203ENST00000278386 MGMTP16455 207 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms