RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 RPS16P62249 146 aaKnown RBP7.32□□□□□ -1.24
VPS4B-201ENST00000238497 CYCSP99999 105 aaKnown RBP7.32□□□□□ -1.24
VPS4B-201ENST00000238497 OR8G1Q15617 311 aa7.32□□□□□ -1.24
VPS4B-201ENST00000238497 VAX1Q5SQQ9 334 aa7.32□□□□□ -1.24
VPS4B-201ENST00000238497 PRAMEF6Q5VXH4 476 aa7.32□□□□□ -1.24
VPS4B-201ENST00000238497 KIRREL1Q96J84 757 aa7.32□□□□□ -1.24
VPS4B-201ENST00000238497 SMR3AQ99954 134 aa7.32□□□□□ -1.24
VPS4B-201ENST00000238497 C1QTNF5Q9BXJ0 243 aa7.32□□□□□ -1.24
VPS4B-201ENST00000238497 AKAP9Q99996 3911 aa7.32□□□□□ -1.24
VPS4B-201ENST00000238497 K7EPK0 472 aa7.32□□□□□ -1.24
VPS4B-201ENST00000238497 OR8U9P0C7N5 309 aa7.32□□□□□ -1.24
VPS4B-201ENST00000238497 ATF4P18848 351 aaPredicted RBP7.32□□□□□ -1.24
VPS4B-201ENST00000238497 GABRA2P47869 451 aa7.32□□□□□ -1.24
VPS4B-201ENST00000238497 ZNF616Q08AN1 781 aa7.32□□□□□ -1.24
VPS4B-201ENST00000238497 RBM39Q14498 530 aaKnown RBP7.32□□□□□ -1.24
VPS4B-201ENST00000238497 TESK1Q15569 626 aa7.32□□□□□ -1.24
VPS4B-201ENST00000238497 RPL7L1Q6DKI1 246 aaKnown RBP7.32□□□□□ -1.24
VPS4B-201ENST00000238497 SLC25A24Q6NUK1 477 aa7.32□□□□□ -1.24
VPS4B-201ENST00000238497 FOXL2NBQ6ZUU3 175 aa7.32□□□□□ -1.24
VPS4B-201ENST00000238497 FAM58AQ8N1B3 248 aa7.32□□□□□ -1.24
VPS4B-201ENST00000238497 FAM71E2Q8N5Q1 922 aa7.32□□□□□ -1.24
VPS4B-201ENST00000238497 PXT1Q8NFP0 134 aa7.32□□□□□ -1.24
VPS4B-201ENST00000238497 OR8U1Q8NH10 309 aa7.32□□□□□ -1.24
VPS4B-201ENST00000238497 USB1Q9BQ65 265 aaKnown RBP7.32□□□□□ -1.24
VPS4B-201ENST00000238497 SYT3Q9BQG1 590 aa7.32□□□□□ -1.24
VPS4B-201ENST00000238497 ADAT1Q9BUB4 502 aaKnown RBP7.32□□□□□ -1.24
VPS4B-201ENST00000238497 GSX1Q9H4S2 264 aaPredicted RBP7.32□□□□□ -1.24
VPS4B-201ENST00000238497 BEX4Q9NWD9 120 aaPredicted RBP7.32□□□□□ -1.24
VPS4B-201ENST00000238497 TNFSF18Q9UNG2 199 aa7.32□□□□□ -1.24
VPS4B-201ENST00000238497 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.32□□□□□ -1.243e-6■■■□□ 15.4
VPS4B-201ENST00000238497 FN1P02751 2386 aaKnown RBP7.31□□□□□ -1.24
VPS4B-201ENST00000238497 IGHV3-43A0A0B4J1X8 118 aa7.31□□□□□ -1.24
VPS4B-201ENST00000238497 RNF222A6NCQ9 220 aa7.31□□□□□ -1.24
VPS4B-201ENST00000238497 TUSC2O75896 110 aa7.31□□□□□ -1.24
VPS4B-201ENST00000238497 IGHV3-43DP0DP04 118 aa7.31□□□□□ -1.24
VPS4B-201ENST00000238497 GNG3P63215 75 aa7.31□□□□□ -1.24
VPS4B-201ENST00000238497 TUSC1Q2TAM9 212 aa7.31□□□□□ -1.24
VPS4B-201ENST00000238497 NCMAPQ5T1S8 102 aa7.31□□□□□ -1.24
VPS4B-201ENST00000238497 FAM53AQ6NSI3 398 aaPredicted RBP7.31□□□□□ -1.24
VPS4B-201ENST00000238497 STPG2Q8N412 459 aa7.31□□□□□ -1.24
VPS4B-201ENST00000238497 MAPK1IP1LQ8NDC0 245 aa7.31□□□□□ -1.24
VPS4B-201ENST00000238497 C2orf50Q96LR7 162 aa7.31□□□□□ -1.24
VPS4B-201ENST00000238497 FGF23Q9GZV9 251 aaPredicted RBP7.31□□□□□ -1.24
VPS4B-201ENST00000238497 SLC2A8Q9NY64 477 aa7.31□□□□□ -1.24
VPS4B-201ENST00000238497 PPYP01298 95 aa7.31□□□□□ -1.24
VPS4B-201ENST00000238497 SOD3P08294 240 aa7.31□□□□□ -1.24
VPS4B-201ENST00000238497 GCH1P30793 250 aa7.31□□□□□ -1.24
VPS4B-201ENST00000238497 OR8B8Q15620 311 aa7.31□□□□□ -1.24
VPS4B-201ENST00000238497 MPPED2Q15777 294 aa7.31□□□□□ -1.24
VPS4B-201ENST00000238497 GABRA6Q16445 453 aa7.31□□□□□ -1.24
VPS4B-201ENST00000238497 CEACAM21Q3KPI0 293 aa7.31□□□□□ -1.24
VPS4B-201ENST00000238497 NHLRC3Q5JS37 347 aa7.31□□□□□ -1.24
VPS4B-201ENST00000238497 GAPTQ8N292 157 aa7.31□□□□□ -1.24
VPS4B-201ENST00000238497 SUMF2Q8NBJ7 301 aa7.31□□□□□ -1.24
VPS4B-201ENST00000238497 RBMXL1Q96E39 390 aaKnown RBP7.31□□□□□ -1.24
VPS4B-201ENST00000238497 B3GALNT1O75752 331 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 CST7O76096 145 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 CFPP27918 469 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 MPV17P39210 176 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 SWI5Q1ZZU3 235 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 PXDC1Q5TGL8 231 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 SHEQ5VZ18 495 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 ZNF573Q86YE8 665 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 OR52M1Q8NGK5 317 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 OR1S2Q8NGQ3 325 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 RNF126Q9BV68 326 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 OR6C65A6NJZ3 312 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 ATP6V1G2-DDX39BF2Z307 99 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 BCL2L11O43521 198 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 OR2F2O95006 317 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 F12P00748 615 aaPredicted RBP7.3□□□□□ -1.24
VPS4B-201ENST00000238497 IGLV3-1P01715 115 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 COX5AP20674 150 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 PTAFRP25105 342 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 CD40P25942 277 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 RPL12P30050 165 aaKnown RBP7.3□□□□□ -1.24
VPS4B-201ENST00000238497 MECP2P51608 486 aaKnown RBP7.3□□□□□ -1.24
VPS4B-201ENST00000238497 OR2F1Q13607 317 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 LPCAT3Q6P1A2 487 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 OR2Z1Q8NG97 314 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 BCL2L2Q92843 193 aaPredicted RBP7.3□□□□□ -1.24
VPS4B-201ENST00000238497 C10orf35Q96D05 121 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 TM2D1Q9BX74 207 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 ATRQ13535 2644 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 NDUFS7O75251 213 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 SERPINE2P07093 398 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 TPT1P13693 172 aaKnown RBP7.3□□□□□ -1.24
VPS4B-201ENST00000238497 UCP2P55851 309 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 POLR2GP62487 172 aaKnown RBP eCLIP7.3□□□□□ -1.24
VPS4B-201ENST00000238497 DPPA2Q7Z7J5 298 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 KCNRGQ8N5I3 272 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 OR10J5Q8NHC4 309 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 TMEM45BQ96B21 275 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 MBD6Q96DN6 1003 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 TP53RKQ96S44 253 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 PCDHB10Q9UN67 800 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 FAM96BQ9Y3D0 163 aa7.3□□□□□ -1.24
VPS4B-201ENST00000238497 IGKV1D-13A0A0B4J2D9 117 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 A0A1B0GW55 424 aa7.29□□□□□ -1.24
VPS4B-201ENST00000238497 SPRY3O43610 288 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms