RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 TYMSP04818 313 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 ASAH2BP0C7U1 165 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 SRD5A1P18405 259 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 COX5AP20674 150 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 MEF2CQ06413 473 aaPredicted RBP2.48□□□□□ -2.01
SCN1A-219ENST00000641575 DEGS2Q6QHC5 323 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 SUSD1Q6UWL2 747 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 DPPA3Q6W0C5 159 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 ZNRF1Q8ND25 227 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 KIR2DL4Q99706 377 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 PMCHL2Q9BQD1 86 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 TXNDC17Q9BRA2 123 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 MAP1LC3BQ9GZQ8 125 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 GLIPR2Q9H4G4 154 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF665Q9H7R5 613 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 NAA60Q9H7X0 242 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 DUS4LO95620 317 aaKnown RBP2.48□□□□□ -2.01
SCN1A-219ENST00000641575 GATA2P23769 480 aaPredicted RBP2.48□□□□□ -2.01
SCN1A-219ENST00000641575 MS4A13Q5J8X5 152 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 NSUN5P2Q63ZY6 315 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 SLC35E4Q6ICL7 350 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 OR5AU1Q8NGC0 362 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 SLC25A46Q96AG3 418 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 DUX5Q96PT3 197 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 RPP25Q9BUL9 199 aaKnown RBP2.48□□□□□ -2.01
SCN1A-219ENST00000641575 A4GALTQ9NPC4 353 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 DLL3Q9NYJ7 618 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 TECRQ9NZ01 308 aaKnown RBP2.48□□□□□ -2.01
SCN1A-219ENST00000641575 BCL9O00512 1426 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 MEIKINA0A087WXM9 373 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 ATP1B1P05026 303 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 LTC4SQ16873 150 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 HLA-DRB5Q30154 266 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 BSXQ3C1V8 233 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 PLK5Q496M5 336 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 TM4SF20Q53R12 229 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 CFAP161Q6P656 301 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 PAQR3Q6TCH7 311 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 FAM159AQ6UWV7 190 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 LCN15Q6UWW0 184 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 IRF2BP2Q7Z5L9 587 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 OR11H7Q8NGC8 314 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 ABHD3Q8WU67 409 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 PRADC1Q9BSG0 188 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 PELI2Q9HAT8 420 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 Q9N2K0 584 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 C3P01024 1663 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 TRGV2A0A075B6R0 118 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 PPIAL4EA0A075B759 164 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 PPIAL4DF5H284 164 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 PPIAL4FP0DN26 164 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 ARRB2P32121 409 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 GNG3P63215 75 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 PCSK4Q6UW60 755 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 TMEM86BQ8N661 226 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 OR2K2Q8NGT1 345 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 LRRC29Q8WV35 223 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 ARPC1AQ92747 370 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 CLDN23Q96B33 292 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 DTD2Q96FN9 168 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 SLIRPQ9GZT3 109 aaKnown RBP2.47□□□□□ -2.01
SCN1A-219ENST00000641575 WDR76Q9H967 626 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF71Q9NQZ8 489 aaPredicted RBP2.47□□□□□ -2.01
SCN1A-219ENST00000641575 PSG11Q9UQ72 335 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 PPIAL4AQ9Y536 164 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 K7ESF4 209 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 FZD9O00144 591 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 CA1P00915 261 aaPredicted RBP2.47□□□□□ -2.01
SCN1A-219ENST00000641575 CD70P32970 193 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 VAX1Q5SQQ9 334 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 FAM78BQ5VT40 261 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 PARM1Q6UWI2 310 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 ARHGEF39Q8N4T4 335 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 SIRT6Q8N6T7 355 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 OR2A5Q96R48 311 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 KDM4FA0A1W2PPD8 638 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 CTDSP2O14595 271 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF324O75467 553 aaPredicted RBP2.47□□□□□ -2.01
SCN1A-219ENST00000641575 PRR35P0CG20 571 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 CD200P41217 278 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 SLC37A1P57057 533 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 OR1D5P58170 312 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 MRPS11P82912 194 aaKnown RBP2.47□□□□□ -2.01
SCN1A-219ENST00000641575 ROBO4Q8WZ75 1007 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 APOBEC3DQ96AK3 386 aaPredicted RBP2.47□□□□□ -2.01
SCN1A-219ENST00000641575 TMEM19Q96HH6 336 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 ALX4Q9H161 411 aaPredicted RBP2.47□□□□□ -2.01
SCN1A-219ENST00000641575 DEFB127Q9H1M4 99 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 RNF167Q9H6Y7 350 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 MBNL1Q9NR56 388 aaKnown RBP2.47□□□□□ -2.01
SCN1A-219ENST00000641575 RBPJLQ9UBG7 517 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 TRAV36DV7A0A075B6V5 113 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 ARRDC5A6NEK1 342 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 LEUTXA8MZ59 168 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 LOC730098B7Z3J9 87 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 SIGLEC5O15389 551 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 IL4P05112 153 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 CD37P11049 281 aa2.47□□□□□ -2.01
SCN1A-219ENST00000641575 NKX2-1P43699 371 aaPredicted RBP2.47□□□□□ -2.01
SCN1A-219ENST00000641575 NAAAQ02083 359 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms