RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 HABP2Q14520 560 aaPredicted RBP3.44□□□□□ -1.86
SCN1A-214ENST00000637038 RIPPLY2Q5TAB7 128 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 ABHD17BQ5VST6 288 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 LYZL2Q7Z4W2 148 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 SLC35E3Q7Z769 313 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 C1QL4Q86Z23 238 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 OR13D1Q8NGV5 346 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 OR2V1Q8NHB1 315 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 LYPD6BQ8NI32 183 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 EXTL1Q92935 676 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 C18orf12Q96KH6 178 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 OR5B12Q96R08 314 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 FOXB1Q99853 325 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 RSRP1Q9BUV0 290 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 PRRG4Q9BZD6 226 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 TMEM222Q9H0R3 208 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 PLA2G2EQ9NZK7 142 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 LRFN1Q9P244 771 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 MCTS1Q9ULC4 181 aaKnown RBP3.44□□□□□ -1.86
SCN1A-214ENST00000637038 BOKQ9UMX3 212 aaPredicted RBP3.44□□□□□ -1.86
SCN1A-214ENST00000637038 ZFHX3Q15911 3703 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 MAP1BP46821 2468 aaKnown RBP3.44□□□□□ -1.86
SCN1A-214ENST00000637038 ANKRD30BLA7E2S9 258 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 FOXI3A8MTJ6 420 aaPredicted RBP3.44□□□□□ -1.86
SCN1A-214ENST00000637038 ZNF724A8MTY0 619 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 HSBP1L1C9JCN9 74 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 ZNF587BE7ETH6 402 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 RPL36A-HNRNPH2H7BZ11 118 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 ANGPTL7O43827 346 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 SSSCA1O60232 199 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 TRAPPC6AO75865 159 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 OTX1P32242 354 aaPredicted RBP3.44□□□□□ -1.86
SCN1A-214ENST00000637038 SP6Q3SY56 376 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 HIKESHIQ53FT3 197 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 KHDC3LQ587J8 217 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 ZNF429Q86V71 674 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 FAM24BQ8N5W8 94 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 EDARADDQ8WWZ3 215 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 PSMF1Q92530 271 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 PINX1Q96BK5 328 aaKnown RBP3.44□□□□□ -1.86
SCN1A-214ENST00000637038 JMJD8Q96S16 334 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 ATP5SQ99766 215 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 PARP12Q9H0J9 701 aaKnown RBP3.44□□□□□ -1.86
SCN1A-214ENST00000637038 GAR1Q9NY12 217 aaKnown RBP3.44□□□□□ -1.86
SCN1A-214ENST00000637038 WSB1Q9Y6I7 421 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 PTPRBP23467 1997 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 C5orf52A6NGY3 159 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 A8MXE2 369 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 TSTD3H0UI37 97 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 NQO2P16083 231 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 H3F3AP84243 136 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 MSMO1Q15800 293 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 NRN1LQ496H8 165 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 ZNF774Q6NX45 483 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 ASCL4Q6XD76 172 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 C1QL2Q7Z5L3 287 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 ZDHHC23Q8IYP9 409 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 TMEM123Q8N131 208 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 ERGIC1Q969X5 290 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 S100PBPQ96BU1 408 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 BOD1Q96IK1 185 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 LYZL4Q96KX0 146 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 C20orf24Q9BUV8 137 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 MRPL37Q9BZE1 423 aaKnown RBP3.44□□□□□ -1.86
SCN1A-214ENST00000637038 GSN-AS1Q9NRJ2 163 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 LYRM2Q9NU23 88 aaPredicted RBP3.44□□□□□ -1.86
SCN1A-214ENST00000637038 NCOR2Q9Y618 2525 aa3.44□□□□□ -1.86
SCN1A-214ENST00000637038 A0A1B0GU03 582 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 A0A1B0GV50 99 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 CDRT15L2A8MXV6 281 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 TNFSF11O14788 317 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 GEMIN2O14893 280 aaKnown RBP3.43□□□□□ -1.86
SCN1A-214ENST00000637038 EFNA2O43921 213 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 MRPL33O75394 65 aaKnown RBP3.43□□□□□ -1.86
SCN1A-214ENST00000637038 DBHP09172 617 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 CBR1P16152 277 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 ZNF32P17041 273 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 OMGP23515 440 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 ATP6V0CP27449 155 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 ARR3P36575 388 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 PTGDSP41222 190 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 UCP2P55851 309 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 OR2B8PP59922 312 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 RPS18P62269 152 aaKnown RBP3.43□□□□□ -1.86
SCN1A-214ENST00000637038 CCL7P80098 99 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 RELBQ01201 579 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 DEFA6Q01524 100 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 MRPL49Q13405 166 aaKnown RBP3.43□□□□□ -1.86
SCN1A-214ENST00000637038 DMRTA1Q5VZB9 504 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 SLC25A26Q70HW3 274 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 ZNF573Q86YE8 665 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 SLC35G3Q8N808 338 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 ZNF709Q8N972 641 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 ZFP62Q8NB50 900 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-214ENST00000637038 OR10AD1Q8NGE0 317 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 APOBEC3DQ96AK3 386 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-214ENST00000637038 RAB39BQ96DA2 213 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 OR2H1Q9GZK4 316 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 CTDSP1Q9GZU7 261 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 ESRP2Q9H6T0 727 aaKnown RBP3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms