RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 SLC18B1Q6NT16 456 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 ZNF793Q6ZN11 406 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 TCF24Q7RTU0 167 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 LHFPL1Q86WI0 220 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 OR1B1Q8NGR6 318 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 TMEM38BQ9NVV0 291 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 VDAC3Q9Y277 283 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 A0A0B4J2E0 115 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 A0A1B0GX12 115 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 ERI3O43414 337 aaKnown RBP5.93□□□□□ -1.46
SCN1A-213ENST00000636759 NRASP01111 189 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 KRASP01116 189 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 GYPAP02724 150 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 VSIG8P0DPA2 414 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 NKX2-1P43699 371 aaPredicted RBP5.93□□□□□ -1.46
SCN1A-213ENST00000636759 RAB30Q15771 203 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 ZIC1Q15915 447 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 PMCHL1Q16048 86 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 PSG3Q16557 428 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 HNRNPA1L2Q32P51 320 aaKnown RBP5.93□□□□□ -1.46
SCN1A-213ENST00000636759 LYZL2Q7Z4W2 148 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 PPP1R14AQ96A00 147 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 SARAFQ96BY9 339 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 SFRP2Q96HF1 295 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 NKX2-4Q9H2Z4 354 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 TBL2Q9Y4P3 447 aaKnown RBP5.93□□□□□ -1.46
SCN1A-213ENST00000636759 B3GALT1Q9Y5Z6 326 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 PRUNE2Q8WUY3 3088 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 WIPF3A6NGB9 483 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 H7C1C5 153 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 HCRTR1O43613 425 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 ZNF737O75373 536 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 ONECUT2O95948 504 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 EN2P19622 333 aaPredicted RBP5.93□□□□□ -1.46
SCN1A-213ENST00000636759 PSMB3P49720 205 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 GFRA1P56159 465 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 PIGPP57054 158 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 PLP1P60201 277 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 PSG9Q00887 426 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 FDX2Q6P4F2 183 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 C12orf54Q6X4T0 127 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 ATOH7Q8N100 152 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 SUMF1Q8NBK3 374 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 OR2AE1Q8NHA4 323 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 FAM222BQ8WU58 562 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 AGMATQ9BSE5 352 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 LMF2Q9BU23 707 aaKnown RBP5.93□□□□□ -1.46
SCN1A-213ENST00000636759 PLAGL1Q9UM63 463 aa5.93□□□□□ -1.46
SCN1A-213ENST00000636759 EDDM13A0A1B0GTR0 161 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 LOC107986453A0A1B0GWG9 222 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 PROB1E7EW31 1015 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 SH2D1BO14796 132 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 GALR2O43603 387 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-213ENST00000636759 STATHP02808 62 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 CLEC3BP05452 202 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 GLI4P10075 376 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 DYNLT3P51808 116 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 RPL15P61313 204 aaKnown RBP5.92□□□□□ -1.46
SCN1A-213ENST00000636759 UNC119Q13432 240 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 MTURNQ8N3F0 131 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 C5orf17Q8NAS9 161 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 TSTD1Q8NFU3 115 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 OR10P1Q8NGE3 313 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 OR1K1Q8NGR3 316 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 SPACA9Q96E40 222 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-213ENST00000636759 SPIN2AQ99865 258 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 SPIN2BQ9BPZ2 258 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 MOB1AQ9H8S9 216 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 NRN1Q9NPD7 142 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 KLHL13Q9P2N7 655 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 POLR1DQ9Y2S0 133 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 CRYM-AS1A6NIL9 109 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 TAX1BP3O14907 124 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 NUDT3O95989 172 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 PRNPP04156 253 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 COL5A1P20908 1838 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-213ENST00000636759 CLDN15P56746 228 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 MEF2BQ02080 365 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-213ENST00000636759 FCRL6Q6DN72 434 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 ASPHD2Q6ICH7 369 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 PTCRAQ6ISU1 281 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-213ENST00000636759 SFTPA1Q8IWL2 248 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 MUC15Q8N387 334 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 TMEM252Q8N6L7 170 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 OR52M1Q8NGK5 317 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 LHX4Q969G2 390 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 DERL1Q9BUN8 251 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 TMEM59Q9BXS4 323 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 PELI2Q9HAT8 420 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 ZNF286AQ9HBT8 521 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 SLC39A9Q9NUM3 307 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 PILRBQ9UKJ0 227 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 IGSF23A1L1A6 192 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 IGLON5A6NGN9 336 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 SSSCA1O60232 199 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 IGFBP3P17936 291 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-213ENST00000636759 MPV17L2Q567V2 206 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 ALG10Q5BKT4 473 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 C1orf140Q5VVS0 124 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 OR4P4Q8NGL7 312 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms