RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 DOCK10Q96BY6 2186 aa10.88□□□□□ -0.67
LINC00540-203ENST00000631321 MED19A0JLT2 244 aaPredicted RBP10.88□□□□□ -0.67
LINC00540-203ENST00000631321 C5orf52A6NGY3 159 aa10.88□□□□□ -0.67
LINC00540-203ENST00000631321 ANKRD30BLA7E2S9 258 aa10.88□□□□□ -0.67
LINC00540-203ENST00000631321 CHST1O43916 411 aa10.88□□□□□ -0.67
LINC00540-203ENST00000631321 OMGP23515 440 aa10.88□□□□□ -0.67
LINC00540-203ENST00000631321 S100GP29377 79 aa10.88□□□□□ -0.67
LINC00540-203ENST00000631321 CCL20P78556 96 aa10.88□□□□□ -0.67
LINC00540-203ENST00000631321 HLA-DRB3P79483 266 aa10.88□□□□□ -0.67
LINC00540-203ENST00000631321 NUFIP2Q7Z417 695 aaKnown RBP10.88□□□□□ -0.67
LINC00540-203ENST00000631321 FAM58AQ8N1B3 248 aa10.88□□□□□ -0.67
LINC00540-203ENST00000631321 ABHD14AQ9BUJ0 271 aa10.88□□□□□ -0.67
LINC00540-203ENST00000631321 KIAA1456Q9P272 454 aa10.88□□□□□ -0.67
LINC00540-203ENST00000631321 RFNGQ9Y644 331 aa10.88□□□□□ -0.67
LINC00540-203ENST00000631321 KMT2EQ8IZD2 1858 aa10.88□□□□□ -0.67
LINC00540-203ENST00000631321 DMDP11532 3685 aa10.88□□□□□ -0.67
LINC00540-203ENST00000631321 A0A1B0GU03 582 aa10.87□□□□□ -0.67
LINC00540-203ENST00000631321 A0A1W2PNU3 283 aaPredicted RBP10.87□□□□□ -0.67
LINC00540-203ENST00000631321 RBFOX3A6NFN3 312 aa10.87□□□□□ -0.67
LINC00540-203ENST00000631321 PCP4L1A6NKN8 68 aa10.87□□□□□ -0.67
LINC00540-203ENST00000631321 SULT1A1P50225 295 aa10.87□□□□□ -0.67
LINC00540-203ENST00000631321 HIKESHIQ53FT3 197 aa10.87□□□□□ -0.67
LINC00540-203ENST00000631321 DCAF10Q5QP82 559 aa10.87□□□□□ -0.67
LINC00540-203ENST00000631321 DPPA3Q6W0C5 159 aa10.87□□□□□ -0.67
LINC00540-203ENST00000631321 ATP5SQ99766 215 aa10.87□□□□□ -0.67
LINC00540-203ENST00000631321 RARRES2Q99969 163 aa10.87□□□□□ -0.67
LINC00540-203ENST00000631321 OR51I2Q9H344 312 aa10.87□□□□□ -0.67
LINC00540-203ENST00000631321 DLL3Q9NYJ7 618 aa10.87□□□□□ -0.67
LINC00540-203ENST00000631321 VPS13AQ96RL7 3174 aa10.87□□□□□ -0.67
LINC00540-203ENST00000631321 FRYLO94915 3013 aa10.87□□□□□ -0.67
LINC00540-203ENST00000631321 A0A1W2PPH5 198 aa10.87□□□□□ -0.67
LINC00540-203ENST00000631321 A6NLC8 198 aa10.87□□□□□ -0.67
LINC00540-203ENST00000631321 KIAA1324LA8MWY0 1029 aaPredicted RBP10.87□□□□□ -0.67
LINC00540-203ENST00000631321 UBE2CO00762 179 aa10.87□□□□□ -0.67
LINC00540-203ENST00000631321 DEGS1O15121 323 aa10.87□□□□□ -0.67
LINC00540-203ENST00000631321 LILRA1O75019 489 aa10.87□□□□□ -0.67
LINC00540-203ENST00000631321 OR13C7P0DN81 318 aa10.87□□□□□ -0.67
LINC00540-203ENST00000631321 RAB5AP20339 215 aa10.87□□□□□ -0.67
LINC00540-203ENST00000631321 EPHA1P21709 976 aa10.87□□□□□ -0.67
LINC00540-203ENST00000631321 APLNRP35414 380 aa10.87□□□□□ -0.67
LINC00540-203ENST00000631321 SOHLH1Q5JUK2 328 aa10.87□□□□□ -0.67
LINC00540-203ENST00000631321 TCEAL6Q6IPX3 200 aa10.87□□□□□ -0.67
LINC00540-203ENST00000631321 ZFP62Q8NB50 900 aaPredicted RBP10.87□□□□□ -0.67
LINC00540-203ENST00000631321 TCEAL3Q969E4 200 aa10.87□□□□□ -0.67
LINC00540-203ENST00000631321 ZNF488Q96MN9 340 aa10.87□□□□□ -0.67
LINC00540-203ENST00000631321 YPEL4Q96NS1 127 aa10.87□□□□□ -0.67
LINC00540-203ENST00000631321 CDRT15L2A8MXV6 281 aa10.86□□□□□ -0.67
LINC00540-203ENST00000631321 J3QT63 122 aa10.86□□□□□ -0.67
LINC00540-203ENST00000631321 GPR37O15354 613 aa10.86□□□□□ -0.67
LINC00540-203ENST00000631321 CST7O76096 145 aa10.86□□□□□ -0.67
LINC00540-203ENST00000631321 SNRPEP62304 92 aaKnown RBP10.86□□□□□ -0.67
LINC00540-203ENST00000631321 CTAG1AP78358 180 aa10.86□□□□□ -0.67
LINC00540-203ENST00000631321 S100A12P80511 92 aa10.86□□□□□ -0.67
LINC00540-203ENST00000631321 Q6P435 159 aa10.86□□□□□ -0.67
LINC00540-203ENST00000631321 OR10J5Q8NHC4 309 aa10.86□□□□□ -0.67
LINC00540-203ENST00000631321 CD300LFQ8TDQ1 290 aa10.86□□□□□ -0.67
LINC00540-203ENST00000631321 ISOC2Q96AB3 205 aa10.86□□□□□ -0.67
LINC00540-203ENST00000631321 GPR146Q96CH1 333 aa10.86□□□□□ -0.67
LINC00540-203ENST00000631321 C20orf24Q9BUV8 137 aa10.86□□□□□ -0.67
LINC00540-203ENST00000631321 UNKLQ9H9P5 680 aaKnown RBP10.86□□□□□ -0.67
LINC00540-203ENST00000631321 PLA2G3Q9NZ20 509 aa10.86□□□□□ -0.67
LINC00540-203ENST00000631321 TREM2Q9NZC2 230 aa10.86□□□□□ -0.67
LINC00540-203ENST00000631321 A0A0G2JRQ6 117 aa10.86□□□□□ -0.67
LINC00540-203ENST00000631321 LRP5LA4QPB2 252 aa10.86□□□□□ -0.67
LINC00540-203ENST00000631321 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.86□□□□□ -0.67
LINC00540-203ENST00000631321 TNFSF12O43508 249 aa10.86□□□□□ -0.67
LINC00540-203ENST00000631321 EIF3GO75821 320 aaKnown RBP eCLIP10.86□□□□□ -0.67
LINC00540-203ENST00000631321 IL18BPO95998 194 aa10.86□□□□□ -0.67
LINC00540-203ENST00000631321 HOXB1P14653 301 aaPredicted RBP10.86□□□□□ -0.67
LINC00540-203ENST00000631321 DAOP14920 347 aa10.86□□□□□ -0.67
LINC00540-203ENST00000631321 PLGLB1Q02325 96 aa10.86□□□□□ -0.67
LINC00540-203ENST00000631321 EIF2S3LQ2VIR3 472 aaKnown RBP10.86□□□□□ -0.67
LINC00540-203ENST00000631321 ZNF295-AS1Q8N0V1 137 aa10.86□□□□□ -0.67
LINC00540-203ENST00000631321 OR1K1Q8NGR3 316 aa10.86□□□□□ -0.67
LINC00540-203ENST00000631321 RDH5Q92781 318 aa10.86□□□□□ -0.67
LINC00540-203ENST00000631321 BCL2L2Q92843 193 aaPredicted RBP10.86□□□□□ -0.67
LINC00540-203ENST00000631321 GUCD1Q96NT3 240 aa10.86□□□□□ -0.67
LINC00540-203ENST00000631321 GP6Q9HCN6 339 aa10.86□□□□□ -0.67
LINC00540-203ENST00000631321 FREM1Q5H8C1 2179 aa10.86□□□□□ -0.67
LINC00540-203ENST00000631321 A0A1B0GV50 99 aa10.85□□□□□ -0.67
LINC00540-203ENST00000631321 WRBO00258 174 aa10.85□□□□□ -0.67
LINC00540-203ENST00000631321 HS3ST1O14792 307 aa10.85□□□□□ -0.67
LINC00540-203ENST00000631321 TXNL1O43396 289 aa10.85□□□□□ -0.67
LINC00540-203ENST00000631321 DFFBO76075 338 aa10.85□□□□□ -0.67
LINC00540-203ENST00000631321 ACAA1P09110 424 aaPredicted RBP10.85□□□□□ -0.67
LINC00540-203ENST00000631321 ITGA3P26006 1051 aa10.85□□□□□ -0.67
LINC00540-203ENST00000631321 TAS2R30P59541 319 aa10.85□□□□□ -0.67
LINC00540-203ENST00000631321 ZNF154Q13106 437 aa10.85□□□□□ -0.67
LINC00540-203ENST00000631321 CLN3Q13286 438 aa10.85□□□□□ -0.67
LINC00540-203ENST00000631321 LPAL2Q16609 132 aa10.85□□□□□ -0.67
LINC00540-203ENST00000631321 ZNF506Q5JVG8 444 aa10.85□□□□□ -0.67
LINC00540-203ENST00000631321 MOB1BQ7L9L4 216 aa10.85□□□□□ -0.67
LINC00540-203ENST00000631321 MCEMP1Q8IX19 187 aa10.85□□□□□ -0.67
LINC00540-203ENST00000631321 LSM10Q969L4 123 aaKnown RBP10.85□□□□□ -0.67
LINC00540-203ENST00000631321 RAB40CQ96S21 281 aa10.85□□□□□ -0.67
LINC00540-203ENST00000631321 TRAV1-1A0A0B4J248 108 aa10.85□□□□□ -0.67
LINC00540-203ENST00000631321 SRP19P09132 144 aaKnown RBP10.85□□□□□ -0.67
LINC00540-203ENST00000631321 MDH2P40926 338 aaKnown RBP10.85□□□□□ -0.67
LINC00540-203ENST00000631321 TGIF1Q15583 401 aa10.85□□□□□ -0.67
LINC00540-203ENST00000631321 KRBOX4Q5JUW0 171 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms