RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 PPP1R3CQ9UQK1 317 aa6.88□□□□□ -1.31
VPS11-209ENST00000622309 PTRH2Q9Y3E5 179 aaKnown RBP6.88□□□□□ -1.31
VPS11-209ENST00000622309 TICRRQ7Z2Z1 1910 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 TRAV1-1A0A0B4J248 108 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 B4DGG1 531 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 CTRLP40313 264 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 CCR2P41597 374 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 ECI1P42126 302 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 FFAR4Q5NUL3 377 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 FCRL6Q6DN72 434 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 SLC18B1Q6NT16 456 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 TMEM25Q86YD3 366 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 OR4S2Q8NH73 311 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 DOK4Q8TEW6 326 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 ALG14Q96F25 216 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 LINC00615Q96LM1 132 aaPredicted RBP6.87□□□□□ -1.31
VPS11-209ENST00000622309 ZNF703Q9H7S9 590 aaPredicted RBP6.87□□□□□ -1.31
VPS11-209ENST00000622309 GEMIN7Q9H840 131 aaKnown RBP6.87□□□□□ -1.31
VPS11-209ENST00000622309 PLEKHF2Q9H8W4 249 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 PXMP4Q9Y6I8 212 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 ANAPC1Q9H1A4 1944 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 TNFSF12-TNFSF13A0A0A6YY99 330 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 LOC107986453A0A1B0GWG9 222 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 HIDE1A8MVS5 230 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 GRXCR1A8MXD5 290 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 PRR33A8MZF0 331 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 SOCS1O15524 211 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 TNFSF12O43508 249 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 SERF1AO75920 110 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 CRISP2P16562 243 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 IL3RAP26951 378 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 PAX2Q02962 417 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 ALG10Q5BKT4 473 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 KIAA0895LQ68EN5 471 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 AMMECR1LQ6DCA0 310 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 MRGPRGQ86SM5 289 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 LRRC25Q8N386 305 aaPredicted RBP6.87□□□□□ -1.31
VPS11-209ENST00000622309 NRTNQ99748 197 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 HCFC2Q9Y5Z7 792 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 NUP210LQ5VU65 1888 aa6.87□□□□□ -1.31
VPS11-209ENST00000622309 ODAMA1E959 279 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 CRYM-AS1A6NIL9 109 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 GJE1A6NN92 205 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 CST7O76096 145 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 KBTBD11O94819 623 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 HLA-HP01893 362 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 CCL2P13500 99 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 CEBPBP17676 345 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 PPP1CBP62140 327 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 PHYHD1Q5SRE7 291 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 C1orf140Q5VVS0 124 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 DNM1P34Q6PK57 102 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 MARCH3Q86UD3 253 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 ASB10Q8WXI3 467 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 OVCA2Q8WZ82 227 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 ARRDC3Q96B67 414 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 FOXN4Q96NZ1 517 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 LMF2Q9BU23 707 aaKnown RBP6.86□□□□□ -1.31
VPS11-209ENST00000622309 B3GALT1Q9Y5Z6 326 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 IGSF23A1L1A6 192 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 GLI4P10075 376 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 TNFRSF1AP19438 455 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 S100GP29377 79 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 PIGPP57054 158 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 C22orf39Q6P5X5 142 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 PNKDQ8N490 385 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 OR5B3Q8NH48 314 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 LIN37Q96GY3 246 aaPredicted RBP6.86□□□□□ -1.31
VPS11-209ENST00000622309 ZNF681Q96N22 645 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 TPPP3Q9BW30 176 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 ONECUT1Q9UBC0 465 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 CES1P1Q9UKY3 287 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 EMC9Q9Y3B6 208 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 ARID1BQ8NFD5 2236 aaPredicted RBP6.86□□□□□ -1.31
VPS11-209ENST00000622309 OR6C6A6NF89 314 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 C9orf172C9J069 976 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 RAB29O14966 203 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 TIAF1O95411 115 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 IFNA5P01569 189 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 ZNF20P17024 532 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 ADMP35318 185 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 ZNF93P35789 620 aaPredicted RBP6.86□□□□□ -1.31
VPS11-209ENST00000622309 DYNLT3P51808 116 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 SUMO3P55854 103 aaPredicted RBP6.86□□□□□ -1.31
VPS11-209ENST00000622309 YPEL5P62699 121 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 LRRC10Q5BKY1 277 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 ABHD17BQ5VST6 288 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 SP5Q6BEB4 398 aaPredicted RBP6.86□□□□□ -1.31
VPS11-209ENST00000622309 ZNF519Q8TB69 540 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 BANF2Q9H503 90 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 LRIT1Q9P2V4 623 aa6.86□□□□□ -1.31
VPS11-209ENST00000622309 HEATR5BQ9P2D3 2071 aa6.85□□□□□ -1.31
VPS11-209ENST00000622309 VCANP13611 3396 aa6.85□□□□□ -1.31
VPS11-209ENST00000622309 IGLC7A0M8Q6 106 aa6.85□□□□□ -1.31
VPS11-209ENST00000622309 MSTNO14793 375 aa6.85□□□□□ -1.31
VPS11-209ENST00000622309 RBFOX2O43251 390 aaKnown RBP eCLIP6.85□□□□□ -1.31
VPS11-209ENST00000622309 LMX1BO60663 402 aa6.85□□□□□ -1.31
VPS11-209ENST00000622309 NPIPB7O75200 414 aa6.85□□□□□ -1.31
VPS11-209ENST00000622309 MT-CO2P00403 227 aa6.85□□□□□ -1.31
VPS11-209ENST00000622309 AADACP22760 399 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms