RNA–Protein interactions for RNA: ENST00000621245.4

CPNE3-210, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-210ENST00000621245 C5orf24Q7Z6I8 188 aa9.04□□□□□ -0.96
CPNE3-210ENST00000621245 SUMF2Q8NBJ7 301 aa9.04□□□□□ -0.96
CPNE3-210ENST00000621245 PXT1Q8NFP0 134 aa9.04□□□□□ -0.96
CPNE3-210ENST00000621245 OR5D14Q8NGL3 314 aa9.04□□□□□ -0.96
CPNE3-210ENST00000621245 RPEQ96AT9 228 aa9.04□□□□□ -0.96
CPNE3-210ENST00000621245 DUX3Q96PT4 197 aa9.04□□□□□ -0.96
CPNE3-210ENST00000621245 LINC00574Q9H8X3 128 aa9.04□□□□□ -0.96
CPNE3-210ENST00000621245 RHOFQ9HBH0 211 aa9.04□□□□□ -0.96
CPNE3-210ENST00000621245 FAM118AQ9NWS6 357 aa9.04□□□□□ -0.96
CPNE3-210ENST00000621245 PCDHGB5Q9Y5G0 923 aa9.04□□□□□ -0.96
CPNE3-210ENST00000621245 IGHV3-43A0A0B4J1X8 118 aa9.03□□□□□ -0.96
CPNE3-210ENST00000621245 PSMB11A5LHX3 300 aa9.03□□□□□ -0.96
CPNE3-210ENST00000621245 GEMIN2O14893 280 aaKnown RBP9.03□□□□□ -0.96
CPNE3-210ENST00000621245 SLC31A2O15432 143 aa9.03□□□□□ -0.96
CPNE3-210ENST00000621245 IGKV1D-33P01593 117 aa9.03□□□□□ -0.96
CPNE3-210ENST00000621245 IGKV1-33P01594 117 aa9.03□□□□□ -0.96
CPNE3-210ENST00000621245 CCDC159P0C7I6 412 aa9.03□□□□□ -0.96
CPNE3-210ENST00000621245 IGHV3-43DP0DP04 118 aa9.03□□□□□ -0.96
CPNE3-210ENST00000621245 RAB3AP20336 220 aa9.03□□□□□ -0.96
CPNE3-210ENST00000621245 CEACAM3P40198 252 aa9.03□□□□□ -0.96
CPNE3-210ENST00000621245 ECI1P42126 302 aa9.03□□□□□ -0.96
CPNE3-210ENST00000621245 GBX2P52951 348 aaPredicted RBP9.03□□□□□ -0.96
CPNE3-210ENST00000621245 PRRX1P54821 245 aa9.03□□□□□ -0.96
CPNE3-210ENST00000621245 RAB40BQ12829 278 aa9.03□□□□□ -0.96
CPNE3-210ENST00000621245 ASCL4Q6XD76 172 aa9.03□□□□□ -0.96
CPNE3-210ENST00000621245 LCNL1Q6ZST4 164 aa9.03□□□□□ -0.96
CPNE3-210ENST00000621245 OSR2Q8N2R0 312 aa9.03□□□□□ -0.96
CPNE3-210ENST00000621245 ZFP41Q8N8Y5 198 aa9.03□□□□□ -0.96
CPNE3-210ENST00000621245 Q8NFD4 153 aa9.03□□□□□ -0.96
CPNE3-210ENST00000621245 OR4X2Q8NGF9 303 aa9.03□□□□□ -0.96
CPNE3-210ENST00000621245 AKR1E2Q96JD6 320 aa9.03□□□□□ -0.96
CPNE3-210ENST00000621245 Q96M66 194 aa9.03□□□□□ -0.96
CPNE3-210ENST00000621245 CCDC140Q96MF4 163 aa9.03□□□□□ -0.96
CPNE3-210ENST00000621245 GPER1Q99527 375 aa9.03□□□□□ -0.96
CPNE3-210ENST00000621245 DPCDQ9BVM2 203 aaPredicted RBP9.03□□□□□ -0.96
CPNE3-210ENST00000621245 S100A14Q9HCY8 104 aa9.03□□□□□ -0.96
CPNE3-210ENST00000621245 FGF20Q9NP95 211 aaPredicted RBP9.03□□□□□ -0.96
CPNE3-210ENST00000621245 MRPS18AQ9NVS2 196 aaKnown RBP9.03□□□□□ -0.96
CPNE3-210ENST00000621245 CLEC2DQ9UHP7 191 aa9.03□□□□□ -0.96
CPNE3-210ENST00000621245 PLECQ15149 4684 aaKnown RBP9.03□□□□□ -0.96
CPNE3-210ENST00000621245 TRAV8-7A0A075B6U6 113 aa9.02□□□□□ -0.97
CPNE3-210ENST00000621245 OOSP1A8MZH6 123 aa9.02□□□□□ -0.97
CPNE3-210ENST00000621245 ZNF736B4DX44 427 aaPredicted RBP9.02□□□□□ -0.97
CPNE3-210ENST00000621245 C15orf65H3BRN8 121 aa9.02□□□□□ -0.97
CPNE3-210ENST00000621245 FADS2O95864 444 aaKnown RBP9.02□□□□□ -0.97
CPNE3-210ENST00000621245 RPSAP08865 295 aaKnown RBP9.02□□□□□ -0.97
CPNE3-210ENST00000621245 TMEM11P17152 192 aa9.02□□□□□ -0.97
CPNE3-210ENST00000621245 MNDAP41218 407 aa9.02□□□□□ -0.97
CPNE3-210ENST00000621245 RBM11P57052 281 aaKnown RBP9.02□□□□□ -0.97
CPNE3-210ENST00000621245 RPL23AP62750 156 aaKnown RBP9.02□□□□□ -0.97
CPNE3-210ENST00000621245 PAX5Q02548 391 aa9.02□□□□□ -0.97
CPNE3-210ENST00000621245 MADCAM1Q13477 382 aa9.02□□□□□ -0.97
CPNE3-210ENST00000621245 HES1Q14469 280 aa9.02□□□□□ -0.97
CPNE3-210ENST00000621245 RSU1Q15404 277 aa9.02□□□□□ -0.97
CPNE3-210ENST00000621245 DDI2Q5TDH0 399 aa9.02□□□□□ -0.97
CPNE3-210ENST00000621245 ZFP1Q6P2D0 407 aa9.02□□□□□ -0.97
CPNE3-210ENST00000621245 OR2W3Q7Z3T1 314 aa9.02□□□□□ -0.97
CPNE3-210ENST00000621245 PQLC1Q8N2U9 271 aa9.02□□□□□ -0.97
CPNE3-210ENST00000621245 CCDC107Q8WV48 283 aa9.02□□□□□ -0.97
CPNE3-210ENST00000621245 TMEM106AQ96A25 262 aa9.02□□□□□ -0.97
CPNE3-210ENST00000621245 C9orf16Q9BUW7 83 aa9.02□□□□□ -0.97
CPNE3-210ENST00000621245 ING4Q9UNL4 249 aa9.02□□□□□ -0.97
CPNE3-210ENST00000621245 ST3GAL6Q9Y274 331 aa9.02□□□□□ -0.97
CPNE3-210ENST00000621245 STAB2Q8WWQ8 2551 aa9.02□□□□□ -0.97
CPNE3-210ENST00000621245 HSD17B6O14756 317 aa9.01□□□□□ -0.97
CPNE3-210ENST00000621245 OR7C1O76099 320 aaPredicted RBP9.01□□□□□ -0.97
CPNE3-210ENST00000621245 FAM106CPP0CH98 169 aa9.01□□□□□ -0.97
CPNE3-210ENST00000621245 SERPINA2P20848 420 aa9.01□□□□□ -0.97
CPNE3-210ENST00000621245 C21orf33P30042 268 aaPredicted RBP9.01□□□□□ -0.97
CPNE3-210ENST00000621245 THBS3P49746 956 aa9.01□□□□□ -0.97
CPNE3-210ENST00000621245 ARHGDIBP52566 201 aa9.01□□□□□ -0.97
CPNE3-210ENST00000621245 RPS11P62280 158 aaKnown RBP eCLIP9.01□□□□□ -0.97
CPNE3-210ENST00000621245 SLC35A2P78381 396 aa9.01□□□□□ -0.97
CPNE3-210ENST00000621245 EGFEM1PQ0D2K5 195 aa9.01□□□□□ -0.97
CPNE3-210ENST00000621245 CCDC144NLQ6NUI1 221 aa9.01□□□□□ -0.97
CPNE3-210ENST00000621245 Q8N6K4 173 aa9.01□□□□□ -0.97
CPNE3-210ENST00000621245 GPR148Q8TDV2 347 aa9.01□□□□□ -0.97
CPNE3-210ENST00000621245 AMMECR1Q9Y4X0 333 aaPredicted RBP9.01□□□□□ -0.97
CPNE3-210ENST00000621245 IGHV1-3A0A0C4DH29 117 aa9□□□□□ -0.97
CPNE3-210ENST00000621245 A0A1W2PPK0 400 aa9□□□□□ -0.97
CPNE3-210ENST00000621245 SNTNA6NMZ2 147 aa9□□□□□ -0.97
CPNE3-210ENST00000621245 SERPINE3A8MV23 424 aa9□□□□□ -0.97
CPNE3-210ENST00000621245 IGFBP3P17936 291 aaPredicted RBP9□□□□□ -0.97
CPNE3-210ENST00000621245 DEFB136Q30KP8 78 aa9□□□□□ -0.97
CPNE3-210ENST00000621245 SLC22A6Q4U2R8 563 aa9□□□□□ -0.97
CPNE3-210ENST00000621245 NHLRC3Q5JS37 347 aa9□□□□□ -0.97
CPNE3-210ENST00000621245 ZNF565Q8N9K5 539 aa9□□□□□ -0.97
CPNE3-210ENST00000621245 ZNF485Q8NCK3 441 aa9□□□□□ -0.97
CPNE3-210ENST00000621245 TMEM104Q8NE00 496 aa9□□□□□ -0.97
CPNE3-210ENST00000621245 OR10X1Q8NGY0 326 aa9□□□□□ -0.97
CPNE3-210ENST00000621245 OR52N1Q8NH53 320 aa9□□□□□ -0.97
CPNE3-210ENST00000621245 CREB3L1Q96BA8 519 aa9□□□□□ -0.97
CPNE3-210ENST00000621245 MRPL48Q96GC5 212 aaKnown RBP9□□□□□ -0.97
CPNE3-210ENST00000621245 PGLYRP3Q96LB9 341 aa9□□□□□ -0.97
CPNE3-210ENST00000621245 Q96MT0 163 aa9□□□□□ -0.97
CPNE3-210ENST00000621245 BARHL1Q9BZE3 327 aa9□□□□□ -0.97
CPNE3-210ENST00000621245 NCOR1P1Q9H4R4 102 aa9□□□□□ -0.97
CPNE3-210ENST00000621245 IFT22Q9H7X7 185 aa9□□□□□ -0.97
CPNE3-210ENST00000621245 IL36GQ9NZH8 169 aa9□□□□□ -0.97
CPNE3-210ENST00000621245 RPL36Q9Y3U8 105 aaKnown RBP9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms