RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 VKORC1Q9BQB6 163 aa13.34□□□□□ -0.27
CPSF1-213ENST00000620219 PIPOXQ9P0Z9 390 aa13.34□□□□□ -0.27
CPSF1-213ENST00000620219 KIAA1549Q9HCM3 1950 aa13.34□□□□□ -0.27
CPSF1-213ENST00000620219 CFDP00746 253 aaPredicted RBP13.34□□□□□ -0.27
CPSF1-213ENST00000620219 CHRNB4P30926 498 aa13.34□□□□□ -0.27
CPSF1-213ENST00000620219 VAX1Q5SQQ9 334 aa13.34□□□□□ -0.27
CPSF1-213ENST00000620219 TEX261Q6UWH6 196 aa13.34□□□□□ -0.27
CPSF1-213ENST00000620219 Q8NA96 180 aa13.34□□□□□ -0.27
CPSF1-213ENST00000620219 OR5M8Q8NGP6 311 aa13.34□□□□□ -0.27
CPSF1-213ENST00000620219 U3KQ87 197 aa13.34□□□□□ -0.27
CPSF1-213ENST00000620219 A0A1W2PPE3 182 aa13.34□□□□□ -0.27
CPSF1-213ENST00000620219 DUS4LO95620 317 aaKnown RBP13.34□□□□□ -0.27
CPSF1-213ENST00000620219 IQCF2Q8IXL9 164 aa13.34□□□□□ -0.27
CPSF1-213ENST00000620219 PLSCR2Q9NRY7 297 aa13.34□□□□□ -0.27
CPSF1-213ENST00000620219 MPTX1A8MV57 137 aa13.33□□□□□ -0.27
CPSF1-213ENST00000620219 GPR31O00270 319 aa13.33□□□□□ -0.27
CPSF1-213ENST00000620219 ZG16O60844 167 aa13.33□□□□□ -0.27
CPSF1-213ENST00000620219 ZBTB25P24278 435 aa13.33□□□□□ -0.27
CPSF1-213ENST00000620219 GLIPR1P48060 266 aa13.33□□□□□ -0.27
CPSF1-213ENST00000620219 BTNL3Q6UXE8 466 aa13.33□□□□□ -0.27
CPSF1-213ENST00000620219 TMEM200AQ86VY9 491 aa13.33□□□□□ -0.27
CPSF1-213ENST00000620219 DCTN5Q9BTE1 182 aa13.33□□□□□ -0.27
CPSF1-213ENST00000620219 ELOVL5Q9NYP7 299 aa13.33□□□□□ -0.27
CPSF1-213ENST00000620219 ZNF107Q9UII5 783 aaPredicted RBP13.33□□□□□ -0.27
CPSF1-213ENST00000620219 J3QW42 95 aa13.33□□□□□ -0.28
CPSF1-213ENST00000620219 HEXAP06865 529 aa13.33□□□□□ -0.28
CPSF1-213ENST00000620219 PSMB6P28072 239 aa13.33□□□□□ -0.28
CPSF1-213ENST00000620219 PPP1CCP36873 323 aaKnown RBP13.33□□□□□ -0.28
CPSF1-213ENST00000620219 ZNF816Q0VGE8 651 aaPredicted RBP13.33□□□□□ -0.28
CPSF1-213ENST00000620219 FBLN5Q9UBX5 448 aa13.33□□□□□ -0.28
CPSF1-213ENST00000620219 FBXO24O75426 580 aa13.33□□□□□ -0.28
CPSF1-213ENST00000620219 SPIN2AQ99865 258 aa13.33□□□□□ -0.28
CPSF1-213ENST00000620219 SPIN2BQ9BPZ2 258 aa13.33□□□□□ -0.28
CPSF1-213ENST00000620219 GPR132Q9UNW8 380 aa13.33□□□□□ -0.28
CPSF1-213ENST00000620219 HFEQ30201 348 aa13.33□□□□□ -0.28
CPSF1-213ENST00000620219 CLEC9AQ6UXN8 241 aa13.33□□□□□ -0.28
CPSF1-213ENST00000620219 SLC38A6Q8IZM9 456 aa13.33□□□□□ -0.28
CPSF1-213ENST00000620219 TMEM217Q8N7C4 229 aa13.33□□□□□ -0.28
CPSF1-213ENST00000620219 OR2D2Q9H210 308 aa13.33□□□□□ -0.28
CPSF1-213ENST00000620219 RASL12Q9NYN1 266 aa13.33□□□□□ -0.28
CPSF1-213ENST00000620219 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.32□□□□□ -0.28
CPSF1-213ENST00000620219 MLNRO43193 412 aa13.32□□□□□ -0.28
CPSF1-213ENST00000620219 IL13RA2Q14627 380 aa13.32□□□□□ -0.28
CPSF1-213ENST00000620219 AKIRIN2Q53H80 203 aa13.32□□□□□ -0.28
CPSF1-213ENST00000620219 NTNG2Q96CW9 530 aa13.32□□□□□ -0.28
CPSF1-213ENST00000620219 OR1A1Q9P1Q5 309 aa13.32□□□□□ -0.28
CPSF1-213ENST00000620219 GPR12P47775 334 aa13.32□□□□□ -0.28
CPSF1-213ENST00000620219 HLA-DRB3P79483 266 aa13.32□□□□□ -0.28
CPSF1-213ENST00000620219 DMBX1Q8NFW5 382 aa13.32□□□□□ -0.28
CPSF1-213ENST00000620219 OR1L1Q8NH94 360 aa13.32□□□□□ -0.28
CPSF1-213ENST00000620219 MEGF10Q96KG7 1140 aa13.32□□□□□ -0.28
CPSF1-213ENST00000620219 SESN1Q9Y6P5 492 aa13.32□□□□□ -0.28
CPSF1-213ENST00000620219 HIVEP3Q5T1R4 2406 aa13.32□□□□□ -0.28
CPSF1-213ENST00000620219 KRASP01116 189 aa13.32□□□□□ -0.28
CPSF1-213ENST00000620219 IGLV3-1P01715 115 aa13.32□□□□□ -0.28
CPSF1-213ENST00000620219 CATR1Q13166 79 aa13.32□□□□□ -0.28
CPSF1-213ENST00000620219 OR52L2PQ8NGH6 319 aa13.32□□□□□ -0.28
CPSF1-213ENST00000620219 NAA60Q9H7X0 242 aa13.32□□□□□ -0.28
CPSF1-213ENST00000620219 NBEAQ8NFP9 2946 aa13.31□□□□□ -0.28
CPSF1-213ENST00000620219 K7EPK0 472 aa13.31□□□□□ -0.28
CPSF1-213ENST00000620219 ANKRD55Q3KP44 614 aa13.31□□□□□ -0.28
CPSF1-213ENST00000620219 TBC1D26Q86UD7 250 aa13.31□□□□□ -0.28
CPSF1-213ENST00000620219 SAXO1Q8IYX7 474 aa13.31□□□□□ -0.28
CPSF1-213ENST00000620219 FAM71E2Q8N5Q1 922 aa13.31□□□□□ -0.28
CPSF1-213ENST00000620219 MITD1Q8WV92 249 aa13.31□□□□□ -0.28
CPSF1-213ENST00000620219 NEUROG1Q92886 237 aa13.31□□□□□ -0.28
CPSF1-213ENST00000620219 PLEKHF2Q9H8W4 249 aa13.31□□□□□ -0.28
CPSF1-213ENST00000620219 GFOD1Q9NXC2 390 aa13.31□□□□□ -0.28
CPSF1-213ENST00000620219 H3BP45 60 aa13.31□□□□□ -0.28
CPSF1-213ENST00000620219 H7C2Y5 167 aa13.31□□□□□ -0.28
CPSF1-213ENST00000620219 CFPP27918 469 aa13.31□□□□□ -0.28
CPSF1-213ENST00000620219 COMMD7Q86VX2 200 aa13.31□□□□□ -0.28
CPSF1-213ENST00000620219 FAM210AQ96ND0 272 aa13.31□□□□□ -0.28
CPSF1-213ENST00000620219 UBTD1Q9HAC8 227 aa13.31□□□□□ -0.28
CPSF1-213ENST00000620219 PFDN2Q9UHV9 154 aa13.31□□□□□ -0.28
CPSF1-213ENST00000620219 TRGV10A0A0A0MS01 117 aa13.31□□□□□ -0.28
CPSF1-213ENST00000620219 PPIHO43447 177 aaKnown RBP13.31□□□□□ -0.28
CPSF1-213ENST00000620219 CEACAM8P31997 349 aaPredicted RBP13.31□□□□□ -0.28
CPSF1-213ENST00000620219 ASCL1P50553 236 aa13.31□□□□□ -0.28
CPSF1-213ENST00000620219 RAB32Q13637 225 aa13.31□□□□□ -0.28
CPSF1-213ENST00000620219 LYZL2Q7Z4W2 148 aa13.31□□□□□ -0.28
CPSF1-213ENST00000620219 MRPL24Q96A35 216 aaKnown RBP13.31□□□□□ -0.28
CPSF1-213ENST00000620219 MS4A5Q9H3V2 200 aa13.31□□□□□ -0.28
CPSF1-213ENST00000620219 CTSDP07339 412 aaPredicted RBP13.31□□□□□ -0.28
CPSF1-213ENST00000620219 CLINT1Q14677 625 aa13.31□□□□□ -0.28
CPSF1-213ENST00000620219 Q3ZCU0 254 aa13.31□□□□□ -0.28
CPSF1-213ENST00000620219 PTPN13Q12923 2485 aa13.3□□□□□ -0.28
CPSF1-213ENST00000620219 C3orf85A0A1B0GTC6 90 aa13.3□□□□□ -0.28
CPSF1-213ENST00000620219 PTBP3O95758 552 aaKnown RBP13.3□□□□□ -0.28
CPSF1-213ENST00000620219 MDH2P40926 338 aaKnown RBP13.3□□□□□ -0.28
CPSF1-213ENST00000620219 GGNBP1Q5YKI7 109 aa13.3□□□□□ -0.28
CPSF1-213ENST00000620219 WDR82Q6UXN9 313 aa13.3□□□□□ -0.28
CPSF1-213ENST00000620219 Q9N2K0 584 aa13.3□□□□□ -0.28
CPSF1-213ENST00000620219 TRAV24A0A0B4J272 114 aa13.3□□□□□ -0.28
CPSF1-213ENST00000620219 MPC2O95563 127 aa13.3□□□□□ -0.28
CPSF1-213ENST00000620219 SSTR5P35346 364 aa13.3□□□□□ -0.28
CPSF1-213ENST00000620219 LEAP2Q969E1 77 aa13.3□□□□□ -0.28
CPSF1-213ENST00000620219 ZNF75AQ96N20 296 aa13.3□□□□□ -0.28
CPSF1-213ENST00000620219 SLX1AQ9BQ83 275 aa13.3□□□□□ -0.28
CPSF1-213ENST00000620219 PARP12Q9H0J9 701 aaKnown RBP13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms