RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 OR5H1A6NKK0 313 aa12.22□□□□□ -0.45
CPSF1-212ENST00000616140 SLC25A5P05141 298 aaKnown RBP12.22□□□□□ -0.45
CPSF1-212ENST00000616140 RPL29P47914 159 aaKnown RBP12.22□□□□□ -0.45
CPSF1-212ENST00000616140 DLK1P80370 383 aa12.22□□□□□ -0.45
CPSF1-212ENST00000616140 RNF151Q2KHN1 245 aa12.22□□□□□ -0.45
CPSF1-212ENST00000616140 Q5BKY6 102 aa12.22□□□□□ -0.45
CPSF1-212ENST00000616140 LINC01590Q5TEZ4 76 aa12.22□□□□□ -0.45
CPSF1-212ENST00000616140 OR1K1Q8NGR3 316 aa12.22□□□□□ -0.45
CPSF1-212ENST00000616140 KCNK17Q96T54 332 aa12.22□□□□□ -0.45
CPSF1-212ENST00000616140 PLXNB2O15031 1838 aa12.22□□□□□ -0.45
CPSF1-212ENST00000616140 MBPP02686 304 aaPredicted RBP12.22□□□□□ -0.45
CPSF1-212ENST00000616140 FCGR3AP08637 254 aa12.22□□□□□ -0.45
CPSF1-212ENST00000616140 OR1L4Q8NGR5 311 aa12.22□□□□□ -0.45
CPSF1-212ENST00000616140 SNX22Q96L94 193 aa12.22□□□□□ -0.45
CPSF1-212ENST00000616140 SH2D2AQ9NP31 389 aa12.22□□□□□ -0.45
CPSF1-212ENST00000616140 PARD6AQ9NPB6 346 aa12.22□□□□□ -0.45
CPSF1-212ENST00000616140 A0A0U1RQV5 110 aa12.22□□□□□ -0.45
CPSF1-212ENST00000616140 C11orf94C9JXX5 98 aa12.22□□□□□ -0.45
CPSF1-212ENST00000616140 H3BQ15 152 aa12.22□□□□□ -0.45
CPSF1-212ENST00000616140 C1QL1O75973 258 aa12.22□□□□□ -0.45
CPSF1-212ENST00000616140 FCARP24071 287 aa12.22□□□□□ -0.45
CPSF1-212ENST00000616140 HNRNPA3P51991 378 aaKnown RBP12.22□□□□□ -0.45
CPSF1-212ENST00000616140 DCAF10Q5QP82 559 aa12.22□□□□□ -0.45
CPSF1-212ENST00000616140 C1orf100Q5SVJ3 147 aa12.22□□□□□ -0.45
CPSF1-212ENST00000616140 HSD17B10Q99714 261 aaKnown RBP12.22□□□□□ -0.45
CPSF1-212ENST00000616140 NRIP2Q9BQI9 281 aa12.22□□□□□ -0.45
CPSF1-212ENST00000616140 GAL3ST2Q9H3Q3 398 aa12.22□□□□□ -0.45
CPSF1-212ENST00000616140 NAT8Q9UHE5 227 aa12.22□□□□□ -0.45
CPSF1-212ENST00000616140 GPR132Q9UNW8 380 aa12.22□□□□□ -0.45
CPSF1-212ENST00000616140 TMPRSS2O15393 492 aa12.21□□□□□ -0.45
CPSF1-212ENST00000616140 ACTL6AO96019 429 aa12.21□□□□□ -0.45
CPSF1-212ENST00000616140 GZMHP20718 246 aa12.21□□□□□ -0.45
CPSF1-212ENST00000616140 RPS4Y1P22090 263 aaKnown RBP12.21□□□□□ -0.45
CPSF1-212ENST00000616140 COX7A1P24310 79 aa12.21□□□□□ -0.45
CPSF1-212ENST00000616140 CAMPP49913 170 aa12.21□□□□□ -0.45
CPSF1-212ENST00000616140 NAAAQ02083 359 aa12.21□□□□□ -0.45
CPSF1-212ENST00000616140 BLNKQ8WV28 456 aa12.21□□□□□ -0.45
CPSF1-212ENST00000616140 SDHCQ99643 169 aaPredicted RBP12.21□□□□□ -0.45
CPSF1-212ENST00000616140 SLC26A1Q9H2B4 701 aa12.21□□□□□ -0.45
CPSF1-212ENST00000616140 VAX2Q9UIW0 290 aa12.21□□□□□ -0.45
CPSF1-212ENST00000616140 IGKV1D-42A0A075B6H8 117 aa12.21□□□□□ -0.45
CPSF1-212ENST00000616140 MMP7P09237 267 aaPredicted RBP12.21□□□□□ -0.45
CPSF1-212ENST00000616140 RBM11P57052 281 aaKnown RBP12.21□□□□□ -0.45
CPSF1-212ENST00000616140 H2BFSP57053 126 aa12.21□□□□□ -0.45
CPSF1-212ENST00000616140 PSG4Q00888 419 aa12.21□□□□□ -0.45
CPSF1-212ENST00000616140 RUNX1Q01196 453 aa12.21□□□□□ -0.45
CPSF1-212ENST00000616140 FOXC1Q12948 553 aa12.21□□□□□ -0.45
CPSF1-212ENST00000616140 GUCA2BQ16661 112 aa12.21□□□□□ -0.45
CPSF1-212ENST00000616140 FHL5Q5TD97 284 aa12.21□□□□□ -0.45
CPSF1-212ENST00000616140 SLC25A40Q8TBP6 338 aa12.21□□□□□ -0.45
CPSF1-212ENST00000616140 IL22RA2Q969J5 263 aa12.21□□□□□ -0.45
CPSF1-212ENST00000616140 TREM2Q9NZC2 230 aa12.21□□□□□ -0.45
CPSF1-212ENST00000616140 OOEPA6NGQ2 149 aa12.21□□□□□ -0.46
CPSF1-212ENST00000616140 C17orf51A8MQB3 221 aa12.21□□□□□ -0.46
CPSF1-212ENST00000616140 RPL36A-HNRNPH2H7BZ11 118 aa12.21□□□□□ -0.46
CPSF1-212ENST00000616140 CA11O75493 328 aa12.21□□□□□ -0.46
CPSF1-212ENST00000616140 ORM2P19652 201 aa12.21□□□□□ -0.46
CPSF1-212ENST00000616140 TMEM50BP56557 158 aa12.21□□□□□ -0.46
CPSF1-212ENST00000616140 GAMTQ14353 236 aa12.21□□□□□ -0.46
CPSF1-212ENST00000616140 CADP27708 2225 aa12.21□□□□□ -0.46
CPSF1-212ENST00000616140 TRBV5-7A0A0A0MS05 114 aa12.21□□□□□ -0.46
CPSF1-212ENST00000616140 PSG2P11465 335 aa12.21□□□□□ -0.46
CPSF1-212ENST00000616140 PAX6P26367 422 aa12.21□□□□□ -0.46
CPSF1-212ENST00000616140 AMTP48728 403 aa12.21□□□□□ -0.46
CPSF1-212ENST00000616140 UBE2L3P68036 154 aaKnown RBP12.21□□□□□ -0.46
CPSF1-212ENST00000616140 HFEQ30201 348 aa12.21□□□□□ -0.46
CPSF1-212ENST00000616140 FBXW9Q5XUX1 488 aa12.21□□□□□ -0.46
CPSF1-212ENST00000616140 UNQ9370/PRO34162Q6UXP9 181 aa12.21□□□□□ -0.46
CPSF1-212ENST00000616140 C11orf42Q8N5U0 333 aa12.21□□□□□ -0.46
CPSF1-212ENST00000616140 OR2M7Q8NG81 312 aa12.21□□□□□ -0.46
CPSF1-212ENST00000616140 OR2J1Q9GZK6 312 aa12.21□□□□□ -0.46
CPSF1-212ENST00000616140 Q9N2K0 584 aa12.21□□□□□ -0.46
CPSF1-212ENST00000616140 FKBP11Q9NYL4 201 aa12.21□□□□□ -0.46
CPSF1-212ENST00000616140 SHANK3Q9BYB0 1731 aa12.2□□□□□ -0.46
CPSF1-212ENST00000616140 A0A1W2PN81 502 aa12.2□□□□□ -0.46
CPSF1-212ENST00000616140 ZNHIT1O43257 154 aa12.2□□□□□ -0.46
CPSF1-212ENST00000616140 AAMDCQ9H7C9 122 aa12.2□□□□□ -0.46
CPSF1-212ENST00000616140 LRRC37AA6NMS7 1700 aa12.2□□□□□ -0.46
CPSF1-212ENST00000616140 GATCO43716 136 aaKnown RBP12.2□□□□□ -0.46
CPSF1-212ENST00000616140 RANP62826 216 aaKnown RBP12.2□□□□□ -0.46
CPSF1-212ENST00000616140 RNASEKQ6P5S7 137 aaKnown RBP12.2□□□□□ -0.46
CPSF1-212ENST00000616140 FA2HQ7L5A8 372 aa12.2□□□□□ -0.46
CPSF1-212ENST00000616140 SLC25A45Q8N413 288 aa12.2□□□□□ -0.46
CPSF1-212ENST00000616140 ADTRPQ96IZ2 230 aa12.2□□□□□ -0.46
CPSF1-212ENST00000616140 NPAS1Q99742 590 aa12.2□□□□□ -0.46
CPSF1-212ENST00000616140 AGFG2O95081 481 aa12.2□□□□□ -0.46
CPSF1-212ENST00000616140 G6PCP35575 357 aa12.2□□□□□ -0.46
CPSF1-212ENST00000616140 TCL1AP56279 114 aa12.2□□□□□ -0.46
CPSF1-212ENST00000616140 IGSF11Q5DX21 431 aa12.2□□□□□ -0.46
CPSF1-212ENST00000616140 MOGAT3Q86VF5 341 aa12.2□□□□□ -0.46
CPSF1-212ENST00000616140 OR4A4PQ8NGN8 299 aa12.2□□□□□ -0.46
CPSF1-212ENST00000616140 ZNF519Q8TB69 540 aa12.2□□□□□ -0.46
CPSF1-212ENST00000616140 ADIPOR1Q96A54 375 aa12.2□□□□□ -0.46
CPSF1-212ENST00000616140 TRAV34A0A0B4J273 112 aa12.19□□□□□ -0.46
CPSF1-212ENST00000616140 A0A1B0GU03 582 aa12.19□□□□□ -0.46
CPSF1-212ENST00000616140 C21orf140B9A014 251 aa12.19□□□□□ -0.46
CPSF1-212ENST00000616140 PAGE4O60829 102 aa12.19□□□□□ -0.46
CPSF1-212ENST00000616140 THY1P04216 161 aa12.19□□□□□ -0.46
CPSF1-212ENST00000616140 MUC1P15941 1255 aaPredicted RBP12.19□□□□□ -0.46
CPSF1-212ENST00000616140 SPNS3Q6ZMD2 512 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms