RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	RBMXL1	Q96E39	390 aa	Known RBP	13.9	□□□□□ -0.18
SHKBP1-223	ENST00000600552	BAG2	O95816	211 aa		13.89	□□□□□ -0.19
SHKBP1-223	ENST00000600552	GAPDH	P04406	335 aa	Known RBP	13.89	□□□□□ -0.19
SHKBP1-223	ENST00000600552	THBS3	P49746	956 aa		13.89	□□□□□ -0.19
SHKBP1-223	ENST00000600552	ETV1	P50549	477 aa		13.89	□□□□□ -0.19
SHKBP1-223	ENST00000600552	RBM11	P57052	281 aa	Known RBP	13.89	□□□□□ -0.19
SHKBP1-223	ENST00000600552	CD69	Q07108	199 aa		13.89	□□□□□ -0.19
SHKBP1-223	ENST00000600552	SLC22A6	Q4U2R8	563 aa		13.89	□□□□□ -0.19
SHKBP1-223	ENST00000600552	OR2G6	Q5TZ20	316 aa		13.89	□□□□□ -0.19
SHKBP1-223	ENST00000600552	RPL22L1	Q6P5R6	122 aa	Known RBP	13.89	□□□□□ -0.19
SHKBP1-223	ENST00000600552	LCNL1	Q6ZST4	164 aa		13.89	□□□□□ -0.19
SHKBP1-223	ENST00000600552	TMEM106A	Q96A25	262 aa		13.89	□□□□□ -0.19
SHKBP1-223	ENST00000600552	EAF1	Q96JC9	268 aa	Predicted RBP	13.89	□□□□□ -0.19
SHKBP1-223	ENST00000600552	NCOR1P1	Q9H4R4	102 aa		13.89	□□□□□ -0.19
SHKBP1-223	ENST00000600552	IGHV1-3	A0A0C4DH29	117 aa		13.88	□□□□□ -0.19
SHKBP1-223	ENST00000600552		A0A1W2PP11	408 aa		13.88	□□□□□ -0.19
SHKBP1-223	ENST00000600552	GZMH	P20718	246 aa		13.88	□□□□□ -0.19
SHKBP1-223	ENST00000600552	BDKRB2	P30411	391 aa		13.88	□□□□□ -0.19
SHKBP1-223	ENST00000600552	KCNJ3	P48549	501 aa		13.88	□□□□□ -0.19
SHKBP1-223	ENST00000600552	ZNF529	Q6P280	563 aa		13.88	□□□□□ -0.19
SHKBP1-223	ENST00000600552	ASCL4	Q6XD76	172 aa		13.88	□□□□□ -0.19
SHKBP1-223	ENST00000600552	TMPRSS11A	Q6ZMR5	421 aa		13.88	□□□□□ -0.19
SHKBP1-223	ENST00000600552	ZNF555	Q8NEP9	628 aa		13.88	□□□□□ -0.19
SHKBP1-223	ENST00000600552	APH1B	Q8WW43	257 aa		13.88	□□□□□ -0.19
SHKBP1-223	ENST00000600552	GPR61	Q9BZJ8	451 aa		13.88	□□□□□ -0.19
SHKBP1-223	ENST00000600552	LINC00574	Q9H8X3	128 aa		13.88	□□□□□ -0.19
SHKBP1-223	ENST00000600552	TMEM138	Q9NPI0	162 aa		13.88	□□□□□ -0.19
SHKBP1-223	ENST00000600552	SIRT4	Q9Y6E7	314 aa	Predicted RBP	13.88	□□□□□ -0.19
SHKBP1-223	ENST00000600552		A0A1W2PPK0	400 aa		13.87	□□□□□ -0.19
SHKBP1-223	ENST00000600552	FGF16	O43320	207 aa		13.87	□□□□□ -0.19
SHKBP1-223	ENST00000600552	UNQ9370/PRO34162	Q6UXP9	181 aa		13.87	□□□□□ -0.19
SHKBP1-223	ENST00000600552	SLC16A12	Q6ZSM3	486 aa		13.87	□□□□□ -0.19
SHKBP1-223	ENST00000600552	ZNF695	Q8IW36	515 aa		13.87	□□□□□ -0.19
SHKBP1-223	ENST00000600552	STPG2	Q8N412	459 aa		13.87	□□□□□ -0.19
SHKBP1-223	ENST00000600552	PRR18	Q8N4B5	295 aa		13.87	□□□□□ -0.19
SHKBP1-223	ENST00000600552	ZFP41	Q8N8Y5	198 aa		13.87	□□□□□ -0.19
SHKBP1-223	ENST00000600552	OR10A7	Q8NGE5	316 aa		13.87	□□□□□ -0.19
SHKBP1-223	ENST00000600552	TFAP2C	Q92754	450 aa		13.87	□□□□□ -0.19
SHKBP1-223	ENST00000600552	S100A14	Q9HCY8	104 aa		13.87	□□□□□ -0.19
SHKBP1-223	ENST00000600552	ZFP57	Q9NU63	452 aa		13.87	□□□□□ -0.19
SHKBP1-223	ENST00000600552	IGHG2	P01859	326 aa		13.86	□□□□□ -0.19
SHKBP1-223	ENST00000600552	RPLP1	P05386	114 aa	Known RBP	13.86	□□□□□ -0.19
SHKBP1-223	ENST00000600552	IL3RA	P26951	378 aa		13.86	□□□□□ -0.19
SHKBP1-223	ENST00000600552	MYCNOS	P40205	109 aa		13.86	□□□□□ -0.19
SHKBP1-223	ENST00000600552	C10orf67	Q8IYJ2	551 aa		13.86	□□□□□ -0.19
SHKBP1-223	ENST00000600552	STX19	Q8N4C7	294 aa		13.86	□□□□□ -0.19
SHKBP1-223	ENST00000600552	OR10V1	Q8NGI7	309 aa		13.86	□□□□□ -0.19
SHKBP1-223	ENST00000600552	OR2T10	Q8NGZ9	312 aa		13.86	□□□□□ -0.19
SHKBP1-223	ENST00000600552	ZNF184	Q99676	751 aa	Predicted RBP	13.86	□□□□□ -0.19
SHKBP1-223	ENST00000600552	MCRIP2	Q9BUT9	160 aa	Known RBP	13.86	□□□□□ -0.19
SHKBP1-223	ENST00000600552	FGF20	Q9NP95	211 aa	Predicted RBP	13.86	□□□□□ -0.19
SHKBP1-223	ENST00000600552	EXOSC5	Q9NQT4	235 aa	Known RBP eCLIP	13.86	□□□□□ -0.19
SHKBP1-223	ENST00000600552	MRPS18A	Q9NVS2	196 aa	Known RBP	13.86	□□□□□ -0.19
SHKBP1-223	ENST00000600552	PAK1IP1	Q9NWT1	392 aa	Predicted RBP	13.86	□□□□□ -0.19
SHKBP1-223	ENST00000600552	GFOD1	Q9NXC2	390 aa		13.86	□□□□□ -0.19
SHKBP1-223	ENST00000600552	ZNF736	B4DX44	427 aa	Predicted RBP	13.85	□□□□□ -0.19
SHKBP1-223	ENST00000600552	AIP	O00170	330 aa		13.85	□□□□□ -0.19
SHKBP1-223	ENST00000600552	SLC31A2	O15432	143 aa		13.85	□□□□□ -0.19
SHKBP1-223	ENST00000600552	WBP4	O75554	376 aa	Known RBP	13.85	□□□□□ -0.19
SHKBP1-223	ENST00000600552	MYL12A	P19105	171 aa		13.85	□□□□□ -0.19
SHKBP1-223	ENST00000600552	GPR12	P47775	334 aa		13.85	□□□□□ -0.19
SHKBP1-223	ENST00000600552	EGFEM1P	Q0D2K5	195 aa		13.85	□□□□□ -0.19
SHKBP1-223	ENST00000600552	ZNF816	Q0VGE8	651 aa	Predicted RBP	13.85	□□□□□ -0.19
SHKBP1-223	ENST00000600552	RIPK1	Q13546	671 aa		13.85	□□□□□ -0.19
SHKBP1-223	ENST00000600552	DEFB136	Q30KP8	78 aa		13.85	□□□□□ -0.19
SHKBP1-223	ENST00000600552	CCDC58	Q4VC31	144 aa		13.85	□□□□□ -0.19
SHKBP1-223	ENST00000600552	PQLC1	Q8N2U9	271 aa		13.85	□□□□□ -0.19
SHKBP1-223	ENST00000600552	JAGN1	Q8N5M9	183 aa		13.85	□□□□□ -0.19
SHKBP1-223	ENST00000600552		Q8NFD4	153 aa		13.85	□□□□□ -0.19
SHKBP1-223	ENST00000600552	MUL1	Q969V5	352 aa		13.85	□□□□□ -0.19
SHKBP1-223	ENST00000600552	RASL11B	Q9BPW5	248 aa		13.85	□□□□□ -0.19
SHKBP1-223	ENST00000600552	BABAM2	Q9NXR7	383 aa		13.85	□□□□□ -0.19
SHKBP1-223	ENST00000600552	GNG12	Q9UBI6	72 aa		13.85	□□□□□ -0.19
SHKBP1-223	ENST00000600552	CLEC2D	Q9UHP7	191 aa		13.85	□□□□□ -0.19
SHKBP1-223	ENST00000600552	TRAPPC2L	Q9UL33	140 aa		13.85	□□□□□ -0.19
SHKBP1-223	ENST00000600552	PNMA8C	A0A1B0GUJ8	204 aa		13.84	□□□□□ -0.19
SHKBP1-223	ENST00000600552	MAGEA13P	A6NCF6	341 aa		13.84	□□□□□ -0.19
SHKBP1-223	ENST00000600552	C15orf65	H3BRN8	121 aa		13.84	□□□□□ -0.19
SHKBP1-223	ENST00000600552	CCL24	O00175	119 aa		13.84	□□□□□ -0.19
SHKBP1-223	ENST00000600552	AP4M1	O00189	453 aa		13.84	□□□□□ -0.19
SHKBP1-223	ENST00000600552	MT-ND4	P03905	459 aa		13.84	□□□□□ -0.19
SHKBP1-223	ENST00000600552	VSIG8	P0DPA2	414 aa		13.84	□□□□□ -0.19
SHKBP1-223	ENST00000600552	GTF2F2	P13984	249 aa		13.84	□□□□□ -0.19
SHKBP1-223	ENST00000600552	DCK	P27707	260 aa		13.84	□□□□□ -0.19
SHKBP1-223	ENST00000600552	PNLIPRP3	Q17RR3	467 aa		13.84	□□□□□ -0.19
SHKBP1-223	ENST00000600552	TEX38	Q6PEX7	206 aa		13.84	□□□□□ -0.19
SHKBP1-223	ENST00000600552	OR4K15	Q8NH41	348 aa		13.84	□□□□□ -0.19
SHKBP1-223	ENST00000600552	CYGB	Q8WWM9	190 aa		13.84	□□□□□ -0.19
SHKBP1-223	ENST00000600552	RTN4IP1	Q8WWV3	396 aa	Predicted RBP	13.84	□□□□□ -0.19
SHKBP1-223	ENST00000600552	GHSR	Q92847	366 aa		13.84	□□□□□ -0.19
SHKBP1-223	ENST00000600552	RAX2	Q96IS3	184 aa		13.84	□□□□□ -0.19
SHKBP1-223	ENST00000600552	CHCHD3	Q9NX63	227 aa	Known RBP	13.84	□□□□□ -0.19
SHKBP1-223	ENST00000600552	ETAA1	Q9NY74	926 aa		13.84	□□□□□ -0.19
SHKBP1-223	ENST00000600552	IL36G	Q9NZH8	169 aa		13.84	□□□□□ -0.19
SHKBP1-223	ENST00000600552	CKLF	Q9UBR5	152 aa		13.84	□□□□□ -0.19
SHKBP1-223	ENST00000600552	MCRIP1	C9JLW8	97 aa		13.83	□□□□□ -0.2
SHKBP1-223	ENST00000600552	OGG1	O15527	345 aa		13.83	□□□□□ -0.2
SHKBP1-223	ENST00000600552	SPINT2	O43291	252 aa		13.83	□□□□□ -0.2
SHKBP1-223	ENST00000600552	MOS	P00540	346 aa		13.83	□□□□□ -0.2
SHKBP1-223	ENST00000600552	LALBA	P00709	142 aa		13.83	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms