RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 SLC25A38Q96DW6 304 aa15.8■□□□□ 0.12
UPF1-209ENST00000600310 MS4A7Q9GZW8 240 aaPredicted RBP15.8■□□□□ 0.12
UPF1-209ENST00000600310 MBNL3Q9NUK0 354 aaKnown RBP15.8■□□□□ 0.12
UPF1-209ENST00000600310 KCNK7Q9Y2U2 307 aa15.8■□□□□ 0.12
UPF1-209ENST00000600310 CEPT1Q9Y6K0 416 aa15.8■□□□□ 0.12
UPF1-209ENST00000600310 NSD1Q96L73 2696 aaPredicted RBP15.8■□□□□ 0.12
UPF1-209ENST00000600310 MFNGO00587 321 aa15.79■□□□□ 0.12
UPF1-209ENST00000600310 ORC5O43913 435 aa15.79■□□□□ 0.12
UPF1-209ENST00000600310 NOL3O60936 208 aaKnown RBP15.79■□□□□ 0.12
UPF1-209ENST00000600310 SCGNO76038 276 aa15.79■□□□□ 0.12
UPF1-209ENST00000600310 NAPSAO96009 420 aa15.79■□□□□ 0.12
UPF1-209ENST00000600310 SPCS2Q15005 226 aa15.79■□□□□ 0.12
UPF1-209ENST00000600310 PRAMEF5Q5TYX0 476 aa15.79■□□□□ 0.12
UPF1-209ENST00000600310 RUSC1-AS1Q66K80 236 aa15.79■□□□□ 0.12
UPF1-209ENST00000600310 OR52W1Q6IF63 320 aa15.79■□□□□ 0.12
UPF1-209ENST00000600310 BRD3OSQ6XYD6 125 aa15.79■□□□□ 0.12
UPF1-209ENST00000600310 BCL6BQ8N143 479 aaPredicted RBP15.79■□□□□ 0.12
UPF1-209ENST00000600310 ISOC1Q96CN7 298 aa15.79■□□□□ 0.12
UPF1-209ENST00000600310 RIMS4Q9H426 269 aaPredicted RBP15.79■□□□□ 0.12
UPF1-209ENST00000600310 AK3Q9UIJ7 227 aa15.79■□□□□ 0.12
UPF1-209ENST00000600310 TRBV6-6A0A0A6YYG2 114 aa15.78■□□□□ 0.12
UPF1-209ENST00000600310 C15orf65H3BRN8 121 aa15.78■□□□□ 0.12
UPF1-209ENST00000600310 HIST1H1DP16402 221 aaKnown RBP15.78■□□□□ 0.12
UPF1-209ENST00000600310 OMGP23515 440 aa15.78■□□□□ 0.12
UPF1-209ENST00000600310 COX7A1P24310 79 aa15.78■□□□□ 0.12
UPF1-209ENST00000600310 SSTR5P35346 364 aa15.78■□□□□ 0.12
UPF1-209ENST00000600310 GDNFP39905 211 aa15.78■□□□□ 0.12
UPF1-209ENST00000600310 ARL6IP1Q15041 203 aa15.78■□□□□ 0.12
UPF1-209ENST00000600310 C6orf183Q5T699 404 aa15.78■□□□□ 0.12
UPF1-209ENST00000600310 TRAT1Q6PIZ9 186 aa15.78■□□□□ 0.12
UPF1-209ENST00000600310 PIP4P2Q8N4L2 257 aa15.78■□□□□ 0.12
UPF1-209ENST00000600310 OR10A7Q8NGE5 316 aa15.78■□□□□ 0.12
UPF1-209ENST00000600310 OR13D1Q8NGV5 346 aa15.78■□□□□ 0.12
UPF1-209ENST00000600310 ACOT12Q8WYK0 555 aa15.78■□□□□ 0.12
UPF1-209ENST00000600310 C22orf15Q8WYQ4 148 aa15.78■□□□□ 0.12
UPF1-209ENST00000600310 IDI2-AS1Q9NZ38 188 aa15.78■□□□□ 0.12
UPF1-209ENST00000600310 POM121CA8CG34 1229 aa15.77■□□□□ 0.12
UPF1-209ENST00000600310 SERPINE3A8MV23 424 aa15.77■□□□□ 0.12
UPF1-209ENST00000600310 H3BMQ9 156 aa15.77■□□□□ 0.12
UPF1-209ENST00000600310 NPFFO15130 113 aa15.77■□□□□ 0.12
UPF1-209ENST00000600310 GNB3P16520 340 aa15.77■□□□□ 0.12
UPF1-209ENST00000600310 ZNF182P17025 639 aaPredicted RBP15.77■□□□□ 0.12
UPF1-209ENST00000600310 RCC1P18754 421 aaPredicted RBP15.77■□□□□ 0.12
UPF1-209ENST00000600310 OLFML2AQ68BL7 652 aa15.77■□□□□ 0.12
UPF1-209ENST00000600310 ZNF880Q6PDB4 577 aa15.77■□□□□ 0.12
UPF1-209ENST00000600310 ZNF554Q86TJ5 538 aa15.77■□□□□ 0.12
UPF1-209ENST00000600310 PNKDQ8N490 385 aa15.77■□□□□ 0.12
UPF1-209ENST00000600310 OR11H6Q8NGC7 330 aa15.77■□□□□ 0.12
UPF1-209ENST00000600310 RFESDQ8TAC1 157 aa15.77■□□□□ 0.12
UPF1-209ENST00000600310 ARL11Q969Q4 196 aa15.77■□□□□ 0.12
UPF1-209ENST00000600310 KIRREL1Q96J84 757 aa15.77■□□□□ 0.12
UPF1-209ENST00000600310 CMSS1Q9BQ75 279 aaKnown RBP15.77■□□□□ 0.12
UPF1-209ENST00000600310 ABCG5Q9H222 651 aa15.77■□□□□ 0.12
UPF1-209ENST00000600310 TMEM133Q9H2Q1 129 aa15.77■□□□□ 0.12
UPF1-209ENST00000600310 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP15.77■□□□□ 0.12
UPF1-209ENST00000600310 SOX21Q9Y651 276 aaPredicted RBP15.77■□□□□ 0.12
UPF1-209ENST00000600310 KIAA2026Q5HYC2 2103 aa15.76■□□□□ 0.11
UPF1-209ENST00000600310 A0A087X0M5 115 aa15.76■□□□□ 0.11
UPF1-209ENST00000600310 A0A0A6YYH2 397 aa15.76■□□□□ 0.11
UPF1-209ENST00000600310 A0A1B0GX30 115 aa15.76■□□□□ 0.11
UPF1-209ENST00000600310 A0A1W2PRD5 423 aa15.76■□□□□ 0.11
UPF1-209ENST00000600310 A0A1W2PRF3 423 aa15.76■□□□□ 0.11
UPF1-209ENST00000600310 A0A1W2PRM7 423 aa15.76■□□□□ 0.11
UPF1-209ENST00000600310 A6NJ64 397 aa15.76■□□□□ 0.11
UPF1-209ENST00000600310 C12orf77C9JDV5 145 aa15.76■□□□□ 0.11
UPF1-209ENST00000600310 CD34P28906 385 aa15.76■□□□□ 0.11
UPF1-209ENST00000600310 MIDNQ504T8 468 aa15.76■□□□□ 0.11
UPF1-209ENST00000600310 BAIAP2L2Q6UXY1 529 aa15.76■□□□□ 0.11
UPF1-209ENST00000600310 AP3S1Q92572 193 aa15.76■□□□□ 0.11
UPF1-209ENST00000600310 SLC6A7Q99884 636 aa15.76■□□□□ 0.11
UPF1-209ENST00000600310 HDHD3Q9BSH5 251 aaPredicted RBP15.76■□□□□ 0.11
UPF1-209ENST00000600310 SUCNR1Q9BXA5 334 aa15.76■□□□□ 0.11
UPF1-209ENST00000600310 RBM38Q9H0Z9 239 aaKnown RBP15.76■□□□□ 0.11
UPF1-209ENST00000600310 ZMAT3Q9HA38 289 aaKnown RBP15.76■□□□□ 0.11
UPF1-209ENST00000600310 CHMP1AQ9HD42 196 aaPredicted RBP15.76■□□□□ 0.11
UPF1-209ENST00000600310 RAB9BQ9NP90 201 aa15.76■□□□□ 0.11
UPF1-209ENST00000600310 C12orf4Q9NQ89 552 aa15.76■□□□□ 0.11
UPF1-209ENST00000600310 KCNIP1Q9NZI2 227 aa15.76■□□□□ 0.11
UPF1-209ENST00000600310 IGHV2-26A0A0B4J1V2 119 aa15.75■□□□□ 0.11
UPF1-209ENST00000600310 IFNA2P01563 188 aa15.75■□□□□ 0.11
UPF1-209ENST00000600310 CD3GP09693 182 aa15.75■□□□□ 0.11
UPF1-209ENST00000600310 CDNFQ49AH0 187 aa15.75■□□□□ 0.11
UPF1-209ENST00000600310 UBE2NLQ5JXB2 153 aa15.75■□□□□ 0.11
UPF1-209ENST00000600310 ZNF626Q68DY1 528 aa15.75■□□□□ 0.11
UPF1-209ENST00000600310 Q6ZPA2 131 aa15.75■□□□□ 0.11
UPF1-209ENST00000600310 MOB1BQ7L9L4 216 aa15.75■□□□□ 0.11
UPF1-209ENST00000600310 SAMD12Q8N8I0 201 aa15.75■□□□□ 0.11
UPF1-209ENST00000600310 PHF21AQ96BD5 680 aa15.75■□□□□ 0.11
UPF1-209ENST00000600310 CMTM3Q96MX0 182 aa15.75■□□□□ 0.11
UPF1-209ENST00000600310 CLEC7AQ9BXN2 247 aa15.75■□□□□ 0.11
UPF1-209ENST00000600310 OCEL1Q9H607 264 aa15.75■□□□□ 0.11
UPF1-209ENST00000600310 TAF9BQ9HBM6 251 aa15.75■□□□□ 0.11
UPF1-209ENST00000600310 COMMD3Q9UBI1 195 aa15.75■□□□□ 0.11
UPF1-209ENST00000600310 A0A075B6Q4 140 aa15.74■□□□□ 0.11
UPF1-209ENST00000600310 ODF3BA8MYP8 253 aa15.74■□□□□ 0.11
UPF1-209ENST00000600310 F2RL2O00254 374 aa15.74■□□□□ 0.11
UPF1-209ENST00000600310 SPINT2O43291 252 aa15.74■□□□□ 0.11
UPF1-209ENST00000600310 HBZP02008 142 aa15.74■□□□□ 0.11
UPF1-209ENST00000600310 GSTP1P09211 210 aaKnown RBP15.74■□□□□ 0.11
UPF1-209ENST00000600310 NFYBP25208 207 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms