RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 PRSS54Q6PEW0 395 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 UNQ5815/PRO19632Q6UWF5 114 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 TREM2Q9NZC2 230 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 C16orf82Q7Z2V1 217 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 ZNF429Q86V71 674 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 MIEN1Q9BRT3 115 aa17.87■□□□□ 0.45
UPF1-207ENST00000599848 A0A0U1RQV5 110 aa17.86■□□□□ 0.45
UPF1-207ENST00000599848 OR5AC1P0C628 307 aa17.86■□□□□ 0.45
UPF1-207ENST00000599848 CEACAM21Q3KPI0 293 aa17.86■□□□□ 0.45
UPF1-207ENST00000599848 THSD4Q6ZMP0 1018 aa17.86■□□□□ 0.45
UPF1-207ENST00000599848 OR10C1Q96KK4 312 aa17.86■□□□□ 0.45
UPF1-207ENST00000599848 A0A0J9YW62 118 aa17.86■□□□□ 0.45
UPF1-207ENST00000599848 TMEM229AB2RXF0 380 aa17.86■□□□□ 0.45
UPF1-207ENST00000599848 ZNF737O75373 536 aa17.86■□□□□ 0.45
UPF1-207ENST00000599848 HYPMO75409 117 aa17.86■□□□□ 0.45
UPF1-207ENST00000599848 RIPPLY2Q5TAB7 128 aa17.86■□□□□ 0.45
UPF1-207ENST00000599848 GPA33Q99795 319 aa17.86■□□□□ 0.45
UPF1-207ENST00000599848 TUBA4BQ9H853 241 aa17.86■□□□□ 0.45
UPF1-207ENST00000599848 ZNF230Q9UIE0 474 aaPredicted RBP17.86■□□□□ 0.45
UPF1-207ENST00000599848 DDX60LQ5H9U9 1706 aaKnown RBP17.86■□□□□ 0.45
UPF1-207ENST00000599848 COL8A1P27658 744 aa17.86■□□□□ 0.45
UPF1-207ENST00000599848 MIDNQ504T8 468 aa17.86■□□□□ 0.45
UPF1-207ENST00000599848 FAAP20Q6NZ36 180 aa17.86■□□□□ 0.45
UPF1-207ENST00000599848 WSB1Q9Y6I7 421 aa17.86■□□□□ 0.45
UPF1-207ENST00000599848 CDS2O95674 445 aa17.86■□□□□ 0.45
UPF1-207ENST00000599848 WNT1P04628 370 aa17.86■□□□□ 0.45
UPF1-207ENST00000599848 APOBEC3AP31941 199 aaPredicted RBP17.86■□□□□ 0.45
UPF1-207ENST00000599848 TEPPQ6URK8 271 aa17.85■□□□□ 0.45
UPF1-207ENST00000599848 OR51B2Q9Y5P1 312 aa17.85■□□□□ 0.45
UPF1-207ENST00000599848 CLDN14O95500 239 aa17.85■□□□□ 0.45
UPF1-207ENST00000599848 MRPL30Q8TCC3 161 aaKnown RBP17.85■□□□□ 0.45
UPF1-207ENST00000599848 KNTC1P50748 2209 aa17.85■□□□□ 0.45
UPF1-207ENST00000599848 PPIAL4CA0A0B4J2A2 164 aa17.85■□□□□ 0.45
UPF1-207ENST00000599848 PPIAL4GP0DN37 164 aa17.85■□□□□ 0.45
UPF1-207ENST00000599848 DLX1P56177 255 aa17.85■□□□□ 0.45
UPF1-207ENST00000599848 RELQ04864 619 aaPredicted RBP17.85■□□□□ 0.45
UPF1-207ENST00000599848 WDR89Q96FK6 387 aaPredicted RBP17.85■□□□□ 0.45
UPF1-207ENST00000599848 KCNK17Q96T54 332 aa17.85■□□□□ 0.45
UPF1-207ENST00000599848 PPYP01298 95 aa17.85■□□□□ 0.45
UPF1-207ENST00000599848 GTF2H5Q6ZYL4 71 aa17.85■□□□□ 0.45
UPF1-207ENST00000599848 PKIBQ9C010 78 aa17.85■□□□□ 0.45
UPF1-207ENST00000599848 TMEM56-RWDD3S4R434 201 aa17.85■□□□□ 0.45
UPF1-207ENST00000599848 CLDN34H7C241 214 aa17.85■□□□□ 0.45
UPF1-207ENST00000599848 PYCARD-AS1I3L0S3 204 aa17.85■□□□□ 0.45
UPF1-207ENST00000599848 PTP4A3O75365 173 aa17.85■□□□□ 0.45
UPF1-207ENST00000599848 ZNF735P0CB33 412 aa17.85■□□□□ 0.45
UPF1-207ENST00000599848 DMRTC1Q5HYR2 192 aa17.85■□□□□ 0.45
UPF1-207ENST00000599848 OR4X2Q8NGF9 303 aa17.85■□□□□ 0.45
UPF1-207ENST00000599848 FAM222BQ8WU58 562 aa17.85■□□□□ 0.45
UPF1-207ENST00000599848 MRM2Q9UI43 246 aaKnown RBP17.85■□□□□ 0.45
UPF1-207ENST00000599848 IGKV3-7A0A075B6H7 116 aa17.84■□□□□ 0.45
UPF1-207ENST00000599848 CRXO43186 299 aaPredicted RBP17.84■□□□□ 0.45
UPF1-207ENST00000599848 MPV17P39210 176 aa17.84■□□□□ 0.45
UPF1-207ENST00000599848 OR8G5Q8NG78 346 aa17.84■□□□□ 0.45
UPF1-207ENST00000599848 OR1K1Q8NGR3 316 aa17.84■□□□□ 0.45
UPF1-207ENST00000599848 POM121Q96HA1 1249 aa17.84■□□□□ 0.45
UPF1-207ENST00000599848 C16orf92Q96LL3 132 aa17.84■□□□□ 0.45
UPF1-207ENST00000599848 CCL13Q99616 98 aa17.84■□□□□ 0.45
UPF1-207ENST00000599848 SCN9AQ15858 1988 aa17.84■□□□□ 0.45
UPF1-207ENST00000599848 C9orf170A2RU37 121 aa17.84■□□□□ 0.45
UPF1-207ENST00000599848 ATP5G2Q06055 141 aa17.84■□□□□ 0.45
UPF1-207ENST00000599848 PNRC1Q12796 327 aaPredicted RBP17.84■□□□□ 0.45
UPF1-207ENST00000599848 FLVCR2Q9UPI3 526 aa17.84■□□□□ 0.45
UPF1-207ENST00000599848 MOB4Q9Y3A3 225 aa17.84■□□□□ 0.45
UPF1-207ENST00000599848 RNASEKQ6P5S7 137 aaKnown RBP17.84■□□□□ 0.45
UPF1-207ENST00000599848 ITLN1Q8WWA0 313 aa17.84■□□□□ 0.45
UPF1-207ENST00000599848 COPS9Q8WXC6 57 aa17.84■□□□□ 0.45
UPF1-207ENST00000599848 TNFRSF12AQ9NP84 129 aa17.84■□□□□ 0.45
UPF1-207ENST00000599848 A0A0B4J293 547 aa17.84■□□□□ 0.45
UPF1-207ENST00000599848 MGPP08493 103 aa17.84■□□□□ 0.45
UPF1-207ENST00000599848 TMEM179BQ7Z7N9 219 aa17.84■□□□□ 0.45
UPF1-207ENST00000599848 DPH3Q96FX2 82 aa17.84■□□□□ 0.45
UPF1-207ENST00000599848 MFAP4P55083 255 aa17.83■□□□□ 0.45
UPF1-207ENST00000599848 SLC25A45Q8N413 288 aa17.83■□□□□ 0.45
UPF1-207ENST00000599848 IGHV3OR15-7A0A075B7D8 119 aa17.83■□□□□ 0.44
UPF1-207ENST00000599848 OGG1O15527 345 aa17.83■□□□□ 0.44
UPF1-207ENST00000599848 KCNAB3O43448 404 aa17.83■□□□□ 0.44
UPF1-207ENST00000599848 CD40P25942 277 aa17.83■□□□□ 0.44
UPF1-207ENST00000599848 ZNF561Q8N587 486 aa17.83■□□□□ 0.44
UPF1-207ENST00000599848 GEMIN2O14893 280 aaKnown RBP17.83■□□□□ 0.44
UPF1-207ENST00000599848 CD160O95971 181 aa17.83■□□□□ 0.44
UPF1-207ENST00000599848 GUK1Q16774 197 aa17.83■□□□□ 0.44
UPF1-207ENST00000599848 SPANXN1Q5VSR9 72 aa17.83■□□□□ 0.44
UPF1-207ENST00000599848 RGPD4Q7Z3J3 1758 aa17.83■□□□□ 0.44
UPF1-207ENST00000599848 MRPL37Q9BZE1 423 aaKnown RBP17.83■□□□□ 0.44
UPF1-207ENST00000599848 CHRNA10Q9GZZ6 450 aa17.83■□□□□ 0.44
UPF1-207ENST00000599848 SLC2A9Q9NRM0 540 aa17.83■□□□□ 0.44
UPF1-207ENST00000599848 AP5S1Q9NUS5 200 aa17.83■□□□□ 0.44
UPF1-207ENST00000599848 A0A1W2PPV9 198 aa17.83■□□□□ 0.44
UPF1-207ENST00000599848 PRSS1P07477 247 aa17.83■□□□□ 0.44
UPF1-207ENST00000599848 FAM78BQ5VT40 261 aa17.83■□□□□ 0.44
UPF1-207ENST00000599848 OR9G1Q8NH87 305 aa17.83■□□□□ 0.44
UPF1-207ENST00000599848 ORAI1Q96D31 301 aa17.83■□□□□ 0.44
UPF1-207ENST00000599848 FLRT3Q9NZU0 649 aa17.83■□□□□ 0.44
UPF1-207ENST00000599848 IGHV1-69-2A0A0G2JMI3 117 aa17.82■□□□□ 0.44
UPF1-207ENST00000599848 DHRS7CA6NNS2 312 aa17.82■□□□□ 0.44
UPF1-207ENST00000599848 KRTDAPP60985 99 aa17.82■□□□□ 0.44
UPF1-207ENST00000599848 TMEM204Q9BSN7 226 aa17.82■□□□□ 0.44
UPF1-207ENST00000599848 LYRM2Q9NU23 88 aaPredicted RBP17.82■□□□□ 0.44
UPF1-207ENST00000599848 METTL1Q9UBP6 276 aaKnown RBP17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms