RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 OR51A2Q8NGJ7 313 aa10.77□□□□□ -0.69
TRIM28-211ENST00000597968 OR52N1Q8NH53 320 aa10.77□□□□□ -0.69
TRIM28-211ENST00000597968 MRGPRDQ8TDS7 321 aa10.77□□□□□ -0.69
TRIM28-211ENST00000597968 CHCHD6Q9BRQ6 235 aa10.77□□□□□ -0.69
TRIM28-211ENST00000597968 FAM192AQ9GZU8 254 aa10.77□□□□□ -0.69
TRIM28-211ENST00000597968 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.77□□□□□ -0.69
TRIM28-211ENST00000597968 ING3Q9NXR8 418 aa10.77□□□□□ -0.69
TRIM28-211ENST00000597968 ZNF580Q9UK33 172 aa10.77□□□□□ -0.69
TRIM28-211ENST00000597968 IGHV1-3A0A0C4DH29 117 aa10.76□□□□□ -0.69
TRIM28-211ENST00000597968 HSPB6O14558 160 aa10.76□□□□□ -0.69
TRIM28-211ENST00000597968 RAMP3O60896 148 aa10.76□□□□□ -0.69
TRIM28-211ENST00000597968 CA11O75493 328 aa10.76□□□□□ -0.69
TRIM28-211ENST00000597968 WBP4O75554 376 aaKnown RBP10.76□□□□□ -0.69
TRIM28-211ENST00000597968 OR7C1O76099 320 aaPredicted RBP10.76□□□□□ -0.69
TRIM28-211ENST00000597968 HTR3BO95264 441 aa10.76□□□□□ -0.69
TRIM28-211ENST00000597968 IGKV1D-33P01593 117 aa10.76□□□□□ -0.69
TRIM28-211ENST00000597968 IGKV1-33P01594 117 aa10.76□□□□□ -0.69
TRIM28-211ENST00000597968 LIMS3P0CW19 117 aa10.76□□□□□ -0.69
TRIM28-211ENST00000597968 LIMS4P0CW20 117 aa10.76□□□□□ -0.69
TRIM28-211ENST00000597968 GTF2F2P13984 249 aa10.76□□□□□ -0.69
TRIM28-211ENST00000597968 CD1BP29016 333 aa10.76□□□□□ -0.69
TRIM28-211ENST00000597968 ZNF137PP52743 207 aa10.76□□□□□ -0.69
TRIM28-211ENST00000597968 MED21Q13503 144 aa10.76□□□□□ -0.69
TRIM28-211ENST00000597968 ZSCAN26Q16670 478 aa10.76□□□□□ -0.69
TRIM28-211ENST00000597968 LRRC36Q1X8D7 754 aa10.76□□□□□ -0.69
TRIM28-211ENST00000597968 PIGYQ3MUY2 71 aa10.76□□□□□ -0.69
TRIM28-211ENST00000597968 XAF1Q6GPH4 301 aa10.76□□□□□ -0.69
TRIM28-211ENST00000597968 ETV3LQ6ZN32 361 aa10.76□□□□□ -0.69
TRIM28-211ENST00000597968 OR2W3Q7Z3T1 314 aa10.76□□□□□ -0.69
TRIM28-211ENST00000597968 CDH26Q8IXH8 852 aa10.76□□□□□ -0.69
TRIM28-211ENST00000597968 STPG2Q8N412 459 aa10.76□□□□□ -0.69
TRIM28-211ENST00000597968 OR2T10Q8NGZ9 312 aa10.76□□□□□ -0.69
TRIM28-211ENST00000597968 PLPPR1Q8TBJ4 325 aa10.76□□□□□ -0.69
TRIM28-211ENST00000597968 SMIM19Q96E16 107 aa10.76□□□□□ -0.69
TRIM28-211ENST00000597968 P2RX4Q99571 388 aa10.76□□□□□ -0.69
TRIM28-211ENST00000597968 ABCG5Q9H222 651 aa10.76□□□□□ -0.69
TRIM28-211ENST00000597968 CHCHD3Q9NX63 227 aaKnown RBP10.76□□□□□ -0.69
TRIM28-211ENST00000597968 H0YHG0 523 aa10.75□□□□□ -0.69
TRIM28-211ENST00000597968 OGG1O15527 345 aa10.75□□□□□ -0.69
TRIM28-211ENST00000597968 RRP9O43818 475 aaKnown RBP10.75□□□□□ -0.69
TRIM28-211ENST00000597968 ELANEP08246 267 aa10.75□□□□□ -0.69
TRIM28-211ENST00000597968 BDKRB2P30411 391 aa10.75□□□□□ -0.69
TRIM28-211ENST00000597968 SSTR5P35346 364 aa10.75□□□□□ -0.69
TRIM28-211ENST00000597968 SOX2P48431 317 aa10.75□□□□□ -0.69
TRIM28-211ENST00000597968 ETV1P50549 477 aa10.75□□□□□ -0.69
TRIM28-211ENST00000597968 PNLIPRP3Q17RR3 467 aa10.75□□□□□ -0.69
TRIM28-211ENST00000597968 TRAT1Q6PIZ9 186 aa10.75□□□□□ -0.69
TRIM28-211ENST00000597968 C10orf99Q6UWK7 81 aa10.75□□□□□ -0.69
TRIM28-211ENST00000597968 ZNF554Q86TJ5 538 aa10.75□□□□□ -0.69
TRIM28-211ENST00000597968 ZNF329Q86UD4 541 aa10.75□□□□□ -0.69
TRIM28-211ENST00000597968 ZNF695Q8IW36 515 aa10.75□□□□□ -0.69
TRIM28-211ENST00000597968 STX19Q8N4C7 294 aa10.75□□□□□ -0.69
TRIM28-211ENST00000597968 Q8N6K4 173 aa10.75□□□□□ -0.69
TRIM28-211ENST00000597968 RNF152Q8N8N0 203 aa10.75□□□□□ -0.69
TRIM28-211ENST00000597968 RFESDQ8TAC1 157 aa10.75□□□□□ -0.69
TRIM28-211ENST00000597968 RGP1Q92546 391 aaPredicted RBP10.75□□□□□ -0.69
TRIM28-211ENST00000597968 B9D2Q9BPU9 175 aa10.75□□□□□ -0.69
TRIM28-211ENST00000597968 BABAM2Q9NXR7 383 aa10.75□□□□□ -0.69
TRIM28-211ENST00000597968 TAS2R4Q9NYW5 299 aa10.75□□□□□ -0.69
TRIM28-211ENST00000597968 CKLFQ9UBR5 152 aa10.75□□□□□ -0.69
TRIM28-211ENST00000597968 SIRT4Q9Y6E7 314 aaPredicted RBP10.75□□□□□ -0.69
TRIM28-211ENST00000597968 KMT2CQ8NEZ4 4911 aaKnown RBP10.75□□□□□ -0.69
TRIM28-211ENST00000597968 KIAA2026Q5HYC2 2103 aa10.75□□□□□ -0.69
TRIM28-211ENST00000597968 DNAH9Q9NYC9 4486 aa10.74□□□□□ -0.69
TRIM28-211ENST00000597968 FAM90A10PA6NDY2 464 aa10.74□□□□□ -0.69
TRIM28-211ENST00000597968 FAM90A7PA6NKC0 464 aa10.74□□□□□ -0.69
TRIM28-211ENST00000597968 FAM90A23PA8MXZ1 464 aa10.74□□□□□ -0.69
TRIM28-211ENST00000597968 C15orf65H3BRN8 121 aa10.74□□□□□ -0.69
TRIM28-211ENST00000597968 GLAP06280 429 aa10.74□□□□□ -0.69
TRIM28-211ENST00000597968 GNG10P50151 68 aa10.74□□□□□ -0.69
TRIM28-211ENST00000597968 KRTAP10-11P60412 298 aa10.74□□□□□ -0.69
TRIM28-211ENST00000597968 RIPK1Q13546 671 aa10.74□□□□□ -0.69
TRIM28-211ENST00000597968 YIF1BQ5BJH7 314 aa10.74□□□□□ -0.69
TRIM28-211ENST00000597968 DEFB121Q5J5C9 76 aa10.74□□□□□ -0.69
TRIM28-211ENST00000597968 UTF1Q5T230 341 aa10.74□□□□□ -0.69
TRIM28-211ENST00000597968 DDI2Q5TDH0 399 aa10.74□□□□□ -0.69
TRIM28-211ENST00000597968 OR2G6Q5TZ20 316 aa10.74□□□□□ -0.69
TRIM28-211ENST00000597968 ZNF497Q6ZNH5 498 aa10.74□□□□□ -0.69
TRIM28-211ENST00000597968 ZNF555Q8NEP9 628 aa10.74□□□□□ -0.69
TRIM28-211ENST00000597968 THRSPQ92748 146 aa10.74□□□□□ -0.69
TRIM28-211ENST00000597968 ARL11Q969Q4 196 aa10.74□□□□□ -0.69
TRIM28-211ENST00000597968 ST6GALNAC6Q969X2 333 aa10.74□□□□□ -0.69
TRIM28-211ENST00000597968 EAF1Q96JC9 268 aaPredicted RBP10.74□□□□□ -0.69
TRIM28-211ENST00000597968 GFOD1Q9NXC2 390 aa10.74□□□□□ -0.69
TRIM28-211ENST00000597968 SMPD3Q9NY59 655 aaPredicted RBP10.74□□□□□ -0.69
TRIM28-211ENST00000597968 CLEC2DQ9UHP7 191 aa10.74□□□□□ -0.69
TRIM28-211ENST00000597968 ING4Q9UNL4 249 aa10.74□□□□□ -0.69
TRIM28-211ENST00000597968 DIMT1Q9UNQ2 313 aaKnown RBP10.74□□□□□ -0.69
TRIM28-211ENST00000597968 EXOSC1Q9Y3B2 195 aaKnown RBP10.74□□□□□ -0.69
TRIM28-211ENST00000597968 SH2D7A6NKC9 451 aaPredicted RBP10.73□□□□□ -0.69
TRIM28-211ENST00000597968 NUDT19A8MXV4 375 aa10.73□□□□□ -0.69
TRIM28-211ENST00000597968 SDCBPO00560 298 aaPredicted RBP10.73□□□□□ -0.69
TRIM28-211ENST00000597968 GEMIN2O14893 280 aaKnown RBP10.73□□□□□ -0.69
TRIM28-211ENST00000597968 SPINT2O43291 252 aa10.73□□□□□ -0.69
TRIM28-211ENST00000597968 OR5H8P0DN80 308 aa10.73□□□□□ -0.69
TRIM28-211ENST00000597968 IGFBP3P17936 291 aaPredicted RBP10.73□□□□□ -0.69
TRIM28-211ENST00000597968 MYL12AP19105 171 aa10.73□□□□□ -0.69
TRIM28-211ENST00000597968 FSTP19883 344 aa10.73□□□□□ -0.69
TRIM28-211ENST00000597968 CDX1P47902 265 aaPredicted RBP10.73□□□□□ -0.69
TRIM28-211ENST00000597968 FOXE3Q13461 319 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms