RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 AESQ08117 197 aa12.35□□□□□ -0.43
TRIM28-207ENST00000597136 RSBN1Q5VWQ0 802 aaPredicted RBP12.35□□□□□ -0.43
TRIM28-207ENST00000597136 SLC35E4Q6ICL7 350 aa12.35□□□□□ -0.43
TRIM28-207ENST00000597136 GAPTQ8N292 157 aa12.35□□□□□ -0.43
TRIM28-207ENST00000597136 Q8N402 240 aa12.35□□□□□ -0.43
TRIM28-207ENST00000597136 OR52I2Q8NH67 350 aa12.35□□□□□ -0.43
TRIM28-207ENST00000597136 SMIM4Q8WVI0 70 aa12.35□□□□□ -0.43
TRIM28-207ENST00000597136 FCAMRQ8WWV6 532 aa12.35□□□□□ -0.43
TRIM28-207ENST00000597136 H1FXQ92522 213 aaKnown RBP12.35□□□□□ -0.43
TRIM28-207ENST00000597136 C12orf4Q9NQ89 552 aa12.35□□□□□ -0.43
TRIM28-207ENST00000597136 TMEM160Q9NX00 188 aa12.35□□□□□ -0.43
TRIM28-207ENST00000597136 ING3Q9NXR8 418 aa12.35□□□□□ -0.43
TRIM28-207ENST00000597136 RPUSD1Q9UJJ7 312 aaKnown RBP12.35□□□□□ -0.43
TRIM28-207ENST00000597136 J3QRK9 145 aa12.35□□□□□ -0.43
TRIM28-207ENST00000597136 MT-ND4P03905 459 aa12.35□□□□□ -0.43
TRIM28-207ENST00000597136 CD40LGP29965 261 aa12.35□□□□□ -0.43
TRIM28-207ENST00000597136 MRPS15P82914 257 aaKnown RBP12.35□□□□□ -0.43
TRIM28-207ENST00000597136 EDDM3AQ14507 147 aa12.35□□□□□ -0.43
TRIM28-207ENST00000597136 RNASE12Q5GAN4 147 aaKnown RBP12.35□□□□□ -0.43
TRIM28-207ENST00000597136 KRBOX4Q5JUW0 171 aa12.35□□□□□ -0.43
TRIM28-207ENST00000597136 CD276Q5ZPR3 534 aa12.35□□□□□ -0.43
TRIM28-207ENST00000597136 GDPD3Q7L5L3 318 aa12.35□□□□□ -0.43
TRIM28-207ENST00000597136 TRAPPC6BQ86SZ2 158 aa12.35□□□□□ -0.43
TRIM28-207ENST00000597136 OCSTAMPQ9BR26 566 aa12.35□□□□□ -0.43
TRIM28-207ENST00000597136 DCTN5Q9BTE1 182 aa12.35□□□□□ -0.43
TRIM28-207ENST00000597136 BEX2Q9BXY8 128 aa12.35□□□□□ -0.43
TRIM28-207ENST00000597136 RIMS4Q9H426 269 aaPredicted RBP12.35□□□□□ -0.43
TRIM28-207ENST00000597136 MEX3AA1L020 520 aaKnown RBP12.34□□□□□ -0.43
TRIM28-207ENST00000597136 MEIS3P1A6NDR6 274 aa12.34□□□□□ -0.43
TRIM28-207ENST00000597136 HOXB4P17483 251 aaPredicted RBP12.34□□□□□ -0.43
TRIM28-207ENST00000597136 GLIPR1P48060 266 aa12.34□□□□□ -0.43
TRIM28-207ENST00000597136 Q6ZPA2 131 aa12.34□□□□□ -0.43
TRIM28-207ENST00000597136 LY6G5BQ8NDX9 201 aa12.34□□□□□ -0.43
TRIM28-207ENST00000597136 MRPL30Q8TCC3 161 aaKnown RBP12.34□□□□□ -0.43
TRIM28-207ENST00000597136 CHMP1AQ9HD42 196 aaPredicted RBP12.34□□□□□ -0.43
TRIM28-207ENST00000597136 KLK11Q9UBX7 282 aa12.34□□□□□ -0.43
TRIM28-207ENST00000597136 KIF25Q9UIL4 384 aa12.34□□□□□ -0.43
TRIM28-207ENST00000597136 ATRQ13535 2644 aa12.33□□□□□ -0.44
TRIM28-207ENST00000597136 TRBV6-6A0A0A6YYG2 114 aa12.33□□□□□ -0.44
TRIM28-207ENST00000597136 TMEM30CPA0ZSE6 113 aa12.33□□□□□ -0.44
TRIM28-207ENST00000597136 ENSAO43768 121 aaKnown RBP12.33□□□□□ -0.44
TRIM28-207ENST00000597136 LANCL1O43813 399 aa12.33□□□□□ -0.44
TRIM28-207ENST00000597136 FCGR3AP08637 254 aa12.33□□□□□ -0.44
TRIM28-207ENST00000597136 GATA3P23771 443 aa12.33□□□□□ -0.44
TRIM28-207ENST00000597136 DTYMKP23919 212 aa12.33□□□□□ -0.44
TRIM28-207ENST00000597136 ERP29P30040 261 aaKnown RBP12.33□□□□□ -0.44
TRIM28-207ENST00000597136 CBX5P45973 191 aa12.33□□□□□ -0.44
TRIM28-207ENST00000597136 P2RX3P56373 397 aa12.33□□□□□ -0.44
TRIM28-207ENST00000597136 EDDM3BP56851 147 aa12.33□□□□□ -0.44
TRIM28-207ENST00000597136 ARF6P62330 175 aa12.33□□□□□ -0.44
TRIM28-207ENST00000597136 BAK1Q16611 211 aa12.33□□□□□ -0.44
TRIM28-207ENST00000597136 GVQW1Q8N7I0 195 aa12.33□□□□□ -0.44
TRIM28-207ENST00000597136 TPRX1Q8N7U7 411 aa12.33□□□□□ -0.44
TRIM28-207ENST00000597136 THAP7Q9BT49 309 aaPredicted RBP12.33□□□□□ -0.44
TRIM28-207ENST00000597136 C19orf12Q9NSK7 152 aa12.33□□□□□ -0.44
TRIM28-207ENST00000597136 MTFP1Q9UDX5 166 aa12.33□□□□□ -0.44
TRIM28-207ENST00000597136 ZNF230Q9UIE0 474 aaPredicted RBP12.33□□□□□ -0.44
TRIM28-207ENST00000597136 AUP1Q9Y679 476 aa12.33□□□□□ -0.44
TRIM28-207ENST00000597136 MEIKINA0A087WXM9 373 aa12.32□□□□□ -0.44
TRIM28-207ENST00000597136 ODAMA1E959 279 aa12.32□□□□□ -0.44
TRIM28-207ENST00000597136 FUOMA2VDF0 154 aa12.32□□□□□ -0.44
TRIM28-207ENST00000597136 POM121CA8CG34 1229 aa12.32□□□□□ -0.44
TRIM28-207ENST00000597136 J3QLI3 93 aa12.32□□□□□ -0.44
TRIM28-207ENST00000597136 ORC5O43913 435 aa12.32□□□□□ -0.44
TRIM28-207ENST00000597136 RBBP9O75884 186 aa12.32□□□□□ -0.44
TRIM28-207ENST00000597136 ECDO95905 644 aaPredicted RBP12.32□□□□□ -0.44
TRIM28-207ENST00000597136 PPIAL4GP0DN37 164 aa12.32□□□□□ -0.44
TRIM28-207ENST00000597136 DLX1P56177 255 aa12.32□□□□□ -0.44
TRIM28-207ENST00000597136 PRB3Q04118 309 aaPredicted RBP12.32□□□□□ -0.44
TRIM28-207ENST00000597136 CHRFAM7AQ494W8 412 aa12.32□□□□□ -0.44
TRIM28-207ENST00000597136 KLF17Q5JT82 389 aaPredicted RBP12.32□□□□□ -0.44
TRIM28-207ENST00000597136 BTNL3Q6UXE8 466 aa12.32□□□□□ -0.44
TRIM28-207ENST00000597136 OR4K15Q8NH41 348 aa12.32□□□□□ -0.44
TRIM28-207ENST00000597136 CCDC107Q8WV48 283 aa12.32□□□□□ -0.44
TRIM28-207ENST00000597136 CCDC32Q9BV29 185 aa12.32□□□□□ -0.44
TRIM28-207ENST00000597136 ST6GALNAC5Q9BVH7 336 aa12.32□□□□□ -0.44
TRIM28-207ENST00000597136 NCOR1P1Q9H4R4 102 aa12.32□□□□□ -0.44
TRIM28-207ENST00000597136 CDC42EP3Q9UKI2 254 aa12.32□□□□□ -0.44
TRIM28-207ENST00000597136 ANAPC10Q9UM13 185 aa12.32□□□□□ -0.44
TRIM28-207ENST00000597136 RBMX2Q9Y388 322 aaKnown RBP12.32□□□□□ -0.44
TRIM28-207ENST00000597136 TRAV39A0A0B4J263 110 aa12.31□□□□□ -0.44
TRIM28-207ENST00000597136 GPR37O15354 613 aa12.31□□□□□ -0.44
TRIM28-207ENST00000597136 RCC1P18754 421 aaPredicted RBP12.31□□□□□ -0.44
TRIM28-207ENST00000597136 ERVFRD-1P60508 538 aa12.31□□□□□ -0.44
TRIM28-207ENST00000597136 SSBP1Q04837 148 aaKnown RBP12.31□□□□□ -0.44
TRIM28-207ENST00000597136 TMEM200BQ69YZ2 307 aa12.31□□□□□ -0.44
TRIM28-207ENST00000597136 ZNF880Q6PDB4 577 aa12.31□□□□□ -0.44
TRIM28-207ENST00000597136 C8orf46Q8TAG6 207 aa12.31□□□□□ -0.44
TRIM28-207ENST00000597136 MAFIPQ8WZ33 124 aa12.31□□□□□ -0.44
TRIM28-207ENST00000597136 TRIM63Q969Q1 353 aa12.31□□□□□ -0.44
TRIM28-207ENST00000597136 PCGF1Q9BSM1 259 aa12.31□□□□□ -0.44
TRIM28-207ENST00000597136 Q9N2K0 584 aa12.31□□□□□ -0.44
TRIM28-207ENST00000597136 IFT46Q9NQC8 304 aa12.31□□□□□ -0.44
TRIM28-207ENST00000597136 TRAPPC2LQ9UL33 140 aa12.31□□□□□ -0.44
TRIM28-207ENST00000597136 IGHV3OR16-10A0A075B7F0 116 aa12.3□□□□□ -0.44
TRIM28-207ENST00000597136 FCER2P06734 321 aa12.3□□□□□ -0.44
TRIM28-207ENST00000597136 MMP9P14780 707 aa12.3□□□□□ -0.44
TRIM28-207ENST00000597136 NAT1P18440 290 aa12.3□□□□□ -0.44
TRIM28-207ENST00000597136 GDNFP39905 211 aa12.3□□□□□ -0.44
TRIM28-207ENST00000597136 RPL31P62899 125 aaKnown RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms