RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.47□□□□□ -1.05
LIG3-216ENST00000593099 CLCF1Q9UBD9 225 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 OOEPA6NGQ2 149 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 MGST3O14880 152 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 B3GALT5-AS1P59052 145 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 RPS27AP62979 156 aaKnown RBP8.47□□□□□ -1.05
LIG3-216ENST00000593099 ZNF826PQ6ZT77 177 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 PECRQ9BY49 303 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 GSX2Q9BZM3 304 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 IGHV3-43A0A0B4J1X8 118 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 GYPAP02724 150 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 IGHV3-43DP0DP04 118 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 PDLIM3Q53GG5 364 aaPredicted RBP8.47□□□□□ -1.05
LIG3-216ENST00000593099 ZIC4Q8N9L1 334 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 RTN4IP1Q8WWV3 396 aaPredicted RBP8.47□□□□□ -1.05
LIG3-216ENST00000593099 BORCS7Q96B45 105 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 C20orf85Q9H1P6 137 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 ARV1Q9H2C2 271 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 PLEKHA3Q9HB20 300 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 A0A0G2JNJ9 132 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 TNFSF12O43508 249 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 DEDDO75618 318 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 FSTP19883 344 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 MMP15P51511 669 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 RAP2BP61225 183 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 PHYHD1Q5SRE7 291 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 PXT1Q8NFP0 134 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 BTF3L4Q96K17 158 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 Q9UFV3 132 aa8.47□□□□□ -1.05
LIG3-216ENST00000593099 SIRT4Q9Y6E7 314 aaPredicted RBP8.47□□□□□ -1.05
LIG3-216ENST00000593099 ZNF407Q9C0G0 2248 aa8.46□□□□□ -1.05
LIG3-216ENST00000593099 LOC390937A0A1W2PQ73 354 aa8.46□□□□□ -1.05
LIG3-216ENST00000593099 DTYMKP23919 212 aa8.46□□□□□ -1.05
LIG3-216ENST00000593099 SSTR2P30874 369 aa8.46□□□□□ -1.05
LIG3-216ENST00000593099 DHODHQ02127 395 aa8.46□□□□□ -1.05
LIG3-216ENST00000593099 MARCH1Q8TCQ1 289 aa8.46□□□□□ -1.05
LIG3-216ENST00000593099 PCGF1Q9BSM1 259 aa8.46□□□□□ -1.05
LIG3-216ENST00000593099 ZNF586Q9NXT0 402 aa8.46□□□□□ -1.05
LIG3-216ENST00000593099 KLK11Q9UBX7 282 aa8.46□□□□□ -1.05
LIG3-216ENST00000593099 CACFD1Q9UGQ2 172 aa8.46□□□□□ -1.05
LIG3-216ENST00000593099 MDFIC2A0A1B0GVS7 189 aa8.46□□□□□ -1.06
LIG3-216ENST00000593099 RPL36A-HNRNPH2H7BZ11 118 aa8.46□□□□□ -1.06
LIG3-216ENST00000593099 J3QKU1 62 aa8.46□□□□□ -1.06
LIG3-216ENST00000593099 SIAH2O43255 324 aa8.46□□□□□ -1.06
LIG3-216ENST00000593099 COL10A1Q03692 680 aa8.46□□□□□ -1.06
LIG3-216ENST00000593099 AKR1C1Q04828 323 aa8.46□□□□□ -1.06
LIG3-216ENST00000593099 ADIRFQ15847 76 aa8.46□□□□□ -1.06
LIG3-216ENST00000593099 PLA1AQ53H76 456 aa8.46□□□□□ -1.06
LIG3-216ENST00000593099 SHEQ5VZ18 495 aa8.46□□□□□ -1.06
LIG3-216ENST00000593099 FAHD2BQ6P2I3 314 aaPredicted RBP8.46□□□□□ -1.06
LIG3-216ENST00000593099 SUMF2Q8NBJ7 301 aa8.46□□□□□ -1.06
LIG3-216ENST00000593099 SSC4DQ8WTU2 575 aa8.46□□□□□ -1.06
LIG3-216ENST00000593099 FAHD2AQ96GK7 314 aa8.46□□□□□ -1.06
LIG3-216ENST00000593099 POFUT1Q9H488 388 aa8.46□□□□□ -1.06
LIG3-216ENST00000593099 RANGRFQ9HD47 186 aaPredicted RBP8.46□□□□□ -1.06
LIG3-216ENST00000593099 PTPRSQ13332 1948 aa8.46□□□□□ -1.06
LIG3-216ENST00000593099 HRASP01112 189 aa8.46□□□□□ -1.06
LIG3-216ENST00000593099 VSIG8P0DPA2 414 aa8.46□□□□□ -1.06
LIG3-216ENST00000593099 PI3P19957 117 aa8.46□□□□□ -1.06
LIG3-216ENST00000593099 PIGPP57054 158 aa8.46□□□□□ -1.06
LIG3-216ENST00000593099 HBG1P69891 147 aa8.46□□□□□ -1.06
LIG3-216ENST00000593099 HBG2P69892 147 aa8.46□□□□□ -1.06
LIG3-216ENST00000593099 MRPS11P82912 194 aaKnown RBP8.46□□□□□ -1.06
LIG3-216ENST00000593099 LEMD1Q68G75 181 aa8.46□□□□□ -1.06
LIG3-216ENST00000593099 FDX2Q6P4F2 183 aa8.46□□□□□ -1.06
LIG3-216ENST00000593099 TEX261Q6UWH6 196 aa8.46□□□□□ -1.06
LIG3-216ENST00000593099 TMEM91Q6ZNR0 172 aa8.46□□□□□ -1.06
LIG3-216ENST00000593099 OR4S1Q8NGB4 309 aa8.46□□□□□ -1.06
LIG3-216ENST00000593099 LHFPL5Q8TAF8 219 aa8.46□□□□□ -1.06
LIG3-216ENST00000593099 WDR13Q9H1Z4 485 aa8.46□□□□□ -1.06
LIG3-216ENST00000593099 TAF9BQ9HBM6 251 aa8.46□□□□□ -1.06
LIG3-216ENST00000593099 SF3B6Q9Y3B4 125 aaKnown RBP8.46□□□□□ -1.06
LIG3-216ENST00000593099 U3KQ87 197 aa8.46□□□□□ -1.06
LIG3-216ENST00000593099 F2RL2O00254 374 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 SOCS1O15524 211 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 NQO2P16083 231 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 ANXA7P20073 488 aaKnown RBP8.45□□□□□ -1.06
LIG3-216ENST00000593099 USF1P22415 310 aaPredicted RBP8.45□□□□□ -1.06
LIG3-216ENST00000593099 ERVFRD-1P60508 538 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 FGF12P61328 243 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 ERHP84090 104 aaKnown RBP8.45□□□□□ -1.06
LIG3-216ENST00000593099 PIGYQ3MUY2 71 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 PERPQ96FX8 193 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 SEC22AQ96IW7 307 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 ADTRPQ96IZ2 230 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 NPAP1Q9NZP6 1156 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 PTPRQQ9UMZ3 2332 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 TRBV5-5A0A0J9YX44 114 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 SPP1P10451 314 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 EMP1P54849 157 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 RBM11P57052 281 aaKnown RBP8.45□□□□□ -1.06
LIG3-216ENST00000593099 ZNF626Q68DY1 528 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 OR4C16Q8NGL9 310 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 TMEM68Q96MH6 324 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 SMIM3Q9BZL3 60 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 MS4A7Q9GZW8 240 aaPredicted RBP8.45□□□□□ -1.06
LIG3-216ENST00000593099 CHODLQ9H9P2 273 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 G6PC2Q9NQR9 355 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 SIRT7Q9NRC8 400 aa8.45□□□□□ -1.06
LIG3-216ENST00000593099 OBSL1O75147 1896 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms